Sequence Similarity Clusters for the Entities in PDB 4FGN

Entity #1 | Chains: A,B
Large T antigen protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 2766
95 % 11 14 3039 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 11 14 3088
70 % 15 18 2404
50 % 15 18 2391
40 % 15 18 2367
30 % 15 18 2251
Entity #2 | Chains: Z
Site I DNA dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: Y
Site I DNA dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures