Sequence Similarity Clusters for the Entities in PDB 4FFW

Entity #1 | Chains: A,B
Dipeptidyl peptidase 4 protein, length: 730 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 3105
95 % 8 8 3848 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 8 8 3890
70 % 116 117 110
50 % 117 118 148
40 % 117 118 163
30 % 120 121 175
Entity #2 | Chains: C,L
Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41233
95 % 2 2 18580 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 117 145 142
70 % 2070 2327 1
50 % 4197 4713 1
40 % 4197 4713 1
30 % 4996 5567 1
Entity #3 | Chains: D,H
Fab heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21185
95 % 2 2 18429 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 18001
70 % 2029 2280 2
50 % 4198 4713 1
40 % 4198 4713 1
30 % 4997 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.