Sequence Similarity Clusters for the Entities in PDB 4FFW

Entity #1 | Chains: A,B
Dipeptidyl peptidase 4 protein, length: 730 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 3196
95 % 8 8 3944 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 8 8 3987
70 % 116 117 131
50 % 117 118 158
40 % 117 118 172
30 % 120 121 178
Entity #2 | Chains: C,L
Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42176
95 % 2 2 19001 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 119 148 140
70 % 2158 2426 1
50 % 4375 4913 1
40 % 4375 4913 1
30 % 5186 5780 1
Entity #3 | Chains: D,H
Fab heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21727
95 % 2 2 18847 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 18396
70 % 2114 2376 2
50 % 4376 4913 1
40 % 4376 4913 1
30 % 5187 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures