Sequence Similarity Clusters for the Entities in PDB 4FFW

Entity #1 | Chains: A,B
Dipeptidyl peptidase 4 protein, length: 730 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 3003
95 % 9 9 3318 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 9 9 3371
70 % 117 118 136
50 % 118 119 163
40 % 118 119 178
30 % 126 127 177
Entity #2 | Chains: C,L
Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23922
95 % 2 2 21245 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 119 148 145
70 % 2221 2516 1
50 % 4508 5101 1
40 % 5057 5750 1
30 % 6307 7168 1
Entity #3 | Chains: D,H
Fab heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23923
95 % 2 2 21246 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 20617
70 % 2187 2475 2
50 % 4509 5101 1
40 % 5058 5750 1
30 % 6308 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures