Sequence Similarity Clusters for the Entities in PDB 4FFV

Entity #1 | Chains: A,B
Dipeptidyl peptidase 4 protein, length: 730 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3240
95 % 1 8 4001 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 8 4047
70 % 89 117 135
50 % 90 118 163
40 % 90 118 174
30 % 91 121 181
Entity #2 | Chains: C,L
11A19 Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42683
95 % 1 2 19260 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 63 148 144
70 % 1668 2474 1
50 % 3382 5011 1
40 % 3382 5011 1
30 % 4006 5941 1
Entity #3 | Chains: D,H
11A19 Fab heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22045
95 % 1 2 19103 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 18638
70 % 1631 2424 2
50 % 3383 5011 1
40 % 3383 5011 1
30 % 4007 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures