Sequence Similarity Clusters for the Entities in PDB 4FFV

Entity #1 | Chains: A,B
Dipeptidyl peptidase 4 protein, length: 730 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3165
95 % 1 8 3907 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 8 3950
70 % 89 117 117
50 % 90 118 153
40 % 90 118 167
30 % 91 121 176
Entity #2 | Chains: C,L
11A19 Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41860
95 % 1 2 18859 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 63 148 140
70 % 1610 2392 1
50 % 3264 4843 1
40 % 3264 4843 1
30 % 3829 5705 1
Entity #3 | Chains: D,H
11A19 Fab heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21541
95 % 1 2 18706 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 18266
70 % 1573 2342 2
50 % 3265 4843 1
40 % 3265 4843 1
30 % 3830 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures