Sequence Similarity Clusters for the Entities in PDB 4FFV

Entity #1 | Chains: A,B
Dipeptidyl peptidase 4 protein, length: 730 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3069
95 % 1 8 3813 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 8 3853
70 % 89 117 109
50 % 90 118 146
40 % 90 118 161
30 % 91 121 174
Entity #2 | Chains: C,L
11A19 Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40957
95 % 1 2 18458 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 61 145 141
70 % 1531 2287 1
50 % 3107 4633 1
40 % 3107 4633 1
30 % 3645 5461 1
Entity #3 | Chains: D,H
11A19 Fab heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21032
95 % 1 2 18310 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 17880
70 % 1501 2244 2
50 % 3108 4633 1
40 % 3108 4633 1
30 % 3646 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.