Sequence Similarity Clusters for the Entities in PDB 4FFV

Entity #1 | Chains: A,B
Dipeptidyl peptidase 4 protein, length: 730 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3024
95 % 1 8 3765 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 8 3805
70 % 87 115 107
50 % 88 116 143
40 % 88 116 160
30 % 88 118 172
Entity #2 | Chains: C,L
11A19 Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40317
95 % 1 2 18120 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 61 145 141
70 % 1518 2264 1
50 % 3081 4587 1
40 % 3081 4587 1
30 % 3604 5392 1
Entity #3 | Chains: D,H
11A19 Fab heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20661
95 % 1 2 17975 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 17551
70 % 1489 2222 2
50 % 3082 4587 1
40 % 3082 4587 1
30 % 3605 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.