Sequence Similarity Clusters for the Entities in PDB 4FDD

Entity #1 | Chains: A
Transportin-1 protein, length: 852 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29115
95 % 4 18 2536 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.8
PDBFlex
90 % 4 18 2612
70 % 4 18 2598
50 % 4 18 2584
40 % 4 18 2536
30 % 4 18 2372
Entity #2 | Chains: B
RNA-binding protein FUS protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61511
95 % 1 1 50104
90 % 1 1 47509
70 % 1 1 41637
50 % 1 1 35324
40 % 1 1 30928
30 % 1 1 25854

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures