Sequence Similarity Clusters for the Entities in PDB 4FDD

Entity #1 | Chains: A
Transportin-1 protein, length: 852 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27780
95 % 4 18 2650 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.8
PDBFlex
90 % 4 18 2713
70 % 4 18 2752
50 % 4 18 2730
40 % 4 18 2673
30 % 4 18 2477
Entity #2 | Chains: B
RNA-binding protein FUS protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64461
95 % 1 1 52460
90 % 1 1 49702
70 % 1 1 43462
50 % 1 1 36848
40 % 1 1 32295
30 % 1 1 26957

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures