Sequence Similarity Clusters for the Entities in PDB 4FDD

Entity #1 | Chains: A
Transportin-1 protein, length: 852 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28564
95 % 4 18 2478 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.9
PDBFlex
90 % 4 18 2551
70 % 4 18 2540
50 % 4 18 2534
40 % 4 18 2485
30 % 4 18 2330
Entity #2 | Chains: B
RNA-binding protein FUS protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60458
95 % 1 1 49313
90 % 1 1 46805
70 % 1 1 41065
50 % 1 1 34843
40 % 1 1 30539
30 % 1 1 25509

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures