Sequence Similarity Clusters for the Entities in PDB 4FDD

Entity #1 | Chains: A
Transportin-1 protein, length: 852 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25046
95 % 3 15 2906 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.9
PDBFlex
90 % 3 15 2950
70 % 3 15 2913
50 % 3 15 2867
40 % 3 15 2820
30 % 3 15 2640
Entity #2 | Chains: B
RNA-binding protein FUS protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74947
95 % 1 1 52294
90 % 1 1 49592
70 % 1 1 43398
50 % 1 1 37017
40 % 1 1 32636
30 % 1 1 27688

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures