Sequence Similarity Clusters for the Entities in PDB 4FDD

Entity #1 | Chains: A
Transportin-1 protein, length: 852 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29658
95 % 4 18 2582 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.8
PDBFlex
90 % 4 18 2654
70 % 4 18 2640
50 % 4 18 2629
40 % 4 18 2582
30 % 4 18 2407
Entity #2 | Chains: B
RNA-binding protein FUS protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62493
95 % 1 1 50908
90 % 1 1 48262
70 % 1 1 42250
50 % 1 1 35861
40 % 1 1 31409
30 % 1 1 26253

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures