Sequence Similarity Clusters for the Entities in PDB 4FDD

Entity #1 | Chains: A
Transportin-1 protein, length: 852 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30046
95 % 4 18 2625 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.8
PDBFlex
90 % 4 18 2694
70 % 4 18 2682
50 % 4 18 2661
40 % 4 18 2617
30 % 4 18 2443
Entity #2 | Chains: B
RNA-binding protein FUS protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63164
95 % 1 1 51436
90 % 1 1 48716
70 % 1 1 42640
50 % 1 1 36179
40 % 1 1 31704
30 % 1 1 26512

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures