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Dpo4 polymerase pre-insertion binary complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
Sequence Clustering and Redundancy Reduction Results
4FBU
Cluster # 209 Members. Sequence cutoff: 40% Cluster size: 131 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4TQR 1 A DNA polymerase IV UNP residues 1-342 273057   2.7.7.7   
2 1JX4 3 A DNA polymerase IV (family Y) 2287   2.7.7.7   
3 4F4W 1 A, B DNA polymerase IV 330779   2.7.7.7   
4 3RAX 1 A, B DNA polymerase IV 2287   2.7.7.7   
5 4QWB 1 A DNA polymerase IV Dpo4 273057   2.7.7.7   
6 2RDI 1 A DNA polymerase IV 273057   2.7.7.7   
7 4FBT 1 A DNA polymerase IV 273057   2.7.7.7   
8 2JEJ 1 A DNA POLYMERASE IV HIS-TAG ADDED TO N-TERMINUS 273057   2.7.7.7   
9 3QZ8 1 A DNA polymerase IV 2287   2.7.7.7   
10 3FDS 1 A DNA polymerase IV 2287   2.7.7.7   
11 3KHR 1 A, B DNA polymerase IV 273057   2.7.7.7   
12 1S9F 3 A, B, C, D DNA polymerase IV 2287   2.7.7.7   
13 2ASD 3 A, B DNA polymerase IV 2287   2.7.7.7   
14 3M9O 1 B DNA polymerase IV 2287   2.7.7.7   
15 3M9N 1 B DNA polymerase IV 2287   2.7.7.7   
16 1RYS 3 A, B DNA polymerase IV 2287   2.7.7.7   
17 3QZ7 1 A DNA polymerase IV 2287   2.7.7.7   
18 4F4X 1 A DNA polymerase IV 330779   2.7.7.7   
19 3KHL 1 A, B DNA polymerase IV 273057   2.7.7.7   
20 2BQ3 1 A DNA POLYMERASE IV 273057   2.7.7.7   
21 1S10 3 A DNA polymerase IV 273057   2.7.7.7   
22 4QWD 1 A DNA polymerase IV Dpo4 273057   2.7.7.7   
23 2IMW 3 P DNA polymerase IV 2287   2.7.7.7   
24 4TQS 1 A, B DNA polymerase IV 273057   2.7.7.7   
25 1N48 3 A DNA polymerase IV 273057   2.7.7.7   
26 2AGQ 3 A DNA polymerase IV 2287   2.7.7.7   
27 3RAQ 1 A, B DNA polymerase IV 2287   2.7.7.7   
28 1S0O 3 A, B DNA polymerase IV 273057   2.7.7.7   
29 4F4Z 1 A, B DNA polymerase IV 330779   2.7.7.7   
30 4NLG 1 A DNA polymerase IV 2285   2.7.7.7   
31 4F50 1 A DNA polymerase IV 330779   2.7.7.7   
32 4QWE 1 A DNA polymerase IV 273057   2.7.7.7   
33 2XC9 1 A DNA POLYMERASE IV 273057   2.7.7.7   
34 2RDJ 4 A, B DNA polymerase IV 273057   2.7.7.7   
35 4QWA 1 A DNA polymerase IV Dpo4 273057   2.7.7.7   
36 2JEF 1 A DNA POLYMERASE IV HIS-TAG ADDED TO N-TERMINUS 273057   2.7.7.7   
37 2UVW 1 A DNA POLYMERASE IV R332E MUTANT OF DPO4 273057   2.7.7.7   
38 2UVV 1 A DNA POLYMERASE IV R332E MUTANT OF DPO4 273057   2.7.7.7   
39 2BR0 1 A DNA POLYMERASE IV 273057   2.7.7.7   
40 3V6J 1 A, J DNA polymerase IV 273057   2.7.7.7   
41 4QW8 1 A DNA polymerase IV Dpo4 273057   2.7.7.7   
42 4JV1 1 A DNA polymerase IV 273057   2.7.7.7   
43 3V6H 3 A, B DNA polymerase IV 273057   2.7.7.7   
44 3T5H 1 A DNA polymerase IV 273057   2.7.7.7   
45 3GIJ 1 A, B DNA polymerase IV 273057   2.7.7.7   
46 4F4Y 1 A, B DNA polymerase IV 330779   2.7.7.7   
47 2C28 1 A DNA POLYMERASE IV 273057   2.7.7.7   
48 2R8I 3 A DNA polymerase IV 2287   2.7.7.7   
49 2W9B 1 A DNA POLYMERASE IV Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS 273057   2.7.7.7   
50 2W9B 2 B DNA POLYMERASE IV Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS 273057   2.7.7.7   
51 2BQR 1 A DNA POLYMERASE IV 273057   2.7.7.7   
52 1JXL 3 A DNA polymerase IV (family Y) 2287   2.7.7.7   
53 3T5J 1 A DNA polymerase IV 273057   2.7.7.7   
54 2IBK 3 A DNA polymerase IV 273057   2.7.7.7   
55 2JEG 1 A DNA POLYMERASE IV HIS-TAG ADDED TO N-TERMINUS 273057   2.7.7.7   
56 3RBD 1 A, B DNA polymerase IV 273057   2.7.7.7   
57 1N56 3 A, B DNA polymerase IV 2287   2.7.7.7   
58 2R8H 3 A DNA polymerase IV 2287   2.7.7.7   
59 3PR5 1 B DNA polymerase IV 2287   2.7.7.7   
60 4QWC 1 A, D DNA polymerase IV Dpo4 273057   2.7.7.7   
61 1RYR 3 A DNA polymerase IV 2287   2.7.7.7   
62 2IA6 1 A, B DNA polymerase IV 273057   2.7.7.7   
63 2J6U 1 A DNA POLYMERASE IV 273057   2.7.7.7   
64 2JEI 1 A DNA POLYMERASE IV HIS-TAG ADDED TO N-TERMINUS 273057   2.7.7.7   
65 2V4R 1 A DNA POLYMERASE IV Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS 273057   2.7.7.7   
66 2XCA 1 A DNA POLYMERASE IV 273057   2.7.7.7   
67 3GII 1 A DNA polymerase IV 273057   2.7.7.7   
68 2V4Q 1 A DNA POLYMERASE IV Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS 273057   2.7.7.7   
69 2BQU 1 A DNA POLYMERASE IV 273057   2.7.7.7   
70 1S97 3 A, B, C, D DNA polymerase IV 2287   2.7.7.7   
71 3PR4 1 A DNA polymerase IV 2287   2.7.7.7   
72 2ASJ 3 A, B DNA polymerase IV 2287   2.7.7.7   
73 3KHH 1 A, B DNA polymerase IV 273057   2.7.7.7   
74 4QW9 1 A DNA polymerase IV Dpo4 273057   2.7.7.7   
75 2W9A 1 A DNA POLYMERASE IV Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS 273057   2.7.7.7   
76 3BQ0 1 A DNA polymerase IV 2285   2.7.7.7   
77 4JUZ 1 A DNA polymerase IV 273057   2.7.7.7   
78 3GIL 1 A, B DNA polymerase IV 273057   2.7.7.7   
79 2J6S 1 A DNA POLYMERASE IV 2287   2.7.7.7   
80 3RB6 1 A, B DNA polymerase IV 273057   2.7.7.7   
81 4FBU 1 A, B DNA polymerase IV 273057   2.7.7.7   
82 3BQ1 3 A DNA polymerase IV 2285   2.7.7.7   
83 1S0M 3 A, B DNA polymerase IV 273057   2.7.7.7   
84 2R8G 3 A DNA polymerase IV 273057   2.7.7.7   
85 2XCP 1 A, B DNA POLYMERASE IV 273057   2.7.7.7   
86 2C22 1 A DNA POLYMERASE IV 273057   2.7.7.7   
87 4G3I 3 A, B DNA polymerase IV 273057   2.7.7.7   
88 4JV2 1 A DNA polymerase IV 273057   2.7.7.7   
89 2UVU 1 A DNA POLYMERASE IV R332A MUTANT OF DPO4 273057   2.7.7.7   
90 3GIM 1 A DNA polymerase IV 273057   2.7.7.7   
91 2C2D 1 A DNA POLYMERASE IV 273057   2.7.7.7   
92 3PW2 1 A DNA polymerase IV UNP residues 1-341 2287   2.7.7.7   
93 3RB4 1 A, B DNA polymerase IV 273057   2.7.7.7   
94 2J6T 1 A DNA POLYMERASE IV 273057   2.7.7.7   
95 2VA2 1 A, B DNA POLYMERASE IV DPO4 273057   2.7.7.7   
96 2C2R 1 A DNA POLYMERASE IV 273057   2.7.7.7   
97 3T5L 1 A DNA polymerase IV 273057   2.7.7.7   
98 2ASL 3 A, B DNA polymerase IV 2287   2.7.7.7   
99 4GC6 1 A DNA polymerase IV 273057   2.7.7.7   
100 4JV0 1 A DNA polymerase IV 273057   2.7.7.7   
101 2AGP 3 A, B DNA polymerase IV 2287   2.7.7.7   
102 3RB3 1 A DNA polymerase IV 273057   2.7.7.7   
103 4GC7 1 A, B DNA polymerase IV 273057   2.7.7.7   
104 3BQ2 3 A DNA polymerase IV 2285   2.7.7.7   
105 3T5K 1 A DNA polymerase IV 273057   2.7.7.7   
106 3PW0 1 A DNA polymerase IV UNP residues 1-341 2287   2.7.7.7   
107 2AGO 3 A DNA polymerase IV 2287   2.7.7.7   
108 2ATL 3 A, B Dpo4 polymerase IV Dpo4 polymerase 2287   2.7.7.7   
109 3RBE 1 A, B DNA polymerase IV 273057   2.7.7.7   
110 3KHG 1 A, B DNA polymerase IV 273057   2.7.7.7   
111 3PW5 1 A DNA polymerase IV UNP residues 1-341 2287   2.7.7.7   
112 1K1S 1 A DBH protein 2287   2.7.7.7   
113 1S0N 3 A DNA polymerase IV 273057   2.7.7.7   
114 2C2E 1 A DNA POLYMERASE IV 273057   2.7.7.7   
115 2V9W 1 A, B DNA POLYMERASE IV DPO4 273057   2.7.7.7   
116 4HYK 1 A DNA polymerase IV 330779   2.7.7.7   
117 3PW4 1 A DNA polymerase IV UNP residues 1-341 2287   2.7.7.7   
118 2UVR 1 A DNA POLYMERASE IV R332A MUTANT OF DPO4 273057   2.7.7.7   
119 3GIK 1 A DNA polymerase IV 273057   2.7.7.7   
120 2W8L 1 A DNA POLYMERASE IV Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS 273057   2.7.7.7   
121 3PW7 1 A, E DNA polymerase IV UNP residues 1-341 2287   2.7.7.7   
122 2VA3 1 A DNA POLYMERASE IV DPO4 273057   2.7.7.7   
123 3PVX 1 A DNA polymerase IV UNP residues 1-341 2287   2.7.7.7   
124 2AU0 3 A, B Dpo4 polymerase IV 2287   2.7.7.7   
125 1K1Q 1 A, B DBH protein 2287   2.7.7.7   
126 2W9C 1 A DNA POLYMERASE IV Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS 273057   2.7.7.7   
127 2W9C 2 B DNA POLYMERASE IV Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS 273057   2.7.7.7   
128 2W8K 1 A DNA POLYMERASE IV Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS 273057   2.7.7.7   
129 3RB0 1 A, B DNA polymerase IV 273057   2.7.7.7   
130 3M9M 1 B DNA polymerase IV 2287   2.7.7.7   
131 3V6K 1 A, J DNA polymerase IV 273057   2.7.7.7   
 
Sequence Clusters for the Sequence Entities in PDB 4FBU
Entity #1: Chains: A,B - DNA polymerase IV protein, length: 341 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 110 103
95% 74 119 139
90% 74 119 148
70% 81 131 150
50% 81 131 188
40% 81 131 209
30% 81 131 225
Entity #2: Chains: D,P - DNA primer dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C,T - DNA template dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

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