Sequence Similarity Clusters for the Entities in PDB 4F7U

Entity #1 | Chains: A,C
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 868
95 % 1 11 1057 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 1 11 1087
70 % 1 12 1075
50 % 1 12 1126
40 % 1 12 1134
30 % 1 20 704
Entity #2 | Chains: B,D
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 783
95 % 1 12 966 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.8
PDBFlex
90 % 1 12 993
70 % 1 12 1026
50 % 1 28 681
40 % 1 28 720
30 % 1 28 722
Entity #3 | Chains: E,H
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 795
95 % 1 11 980 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.1
PDBFlex
90 % 1 11 1010
70 % 1 11 1049
50 % 1 11 1097
40 % 1 11 1104
30 % 1 11 1102
Entity #4 | Chains: F,I
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 877
95 % 1 10 1061 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 1 10 1092
70 % 1 10 1127
50 % 1 10 1182
40 % 1 10 1177
30 % 1 10 1180
Entity #5 | Chains: G,J
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 796
95 % 1 11 981 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 1 11 1011
70 % 1 11 1050
50 % 1 27 703
40 % 1 28 709
30 % 1 28 709
Entity #6 | Chains: P,Q
Methylosome subunit pICln protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30846
95 % 1 1 26805 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 25841
70 % 1 1 23384
50 % 1 1 20060
40 % 1 1 17711
30 % 1 1 14845

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures