Sequence Similarity Clusters for the Entities in PDB 4F7U

Entity #1 | Chains: A,C
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 742
95 % 1 8 1016
90 % 1 8 1039
70 % 1 9 1031
50 % 1 9 1078
40 % 1 9 1106
30 % 1 13 957
Entity #2 | Chains: B,D
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 661
95 % 1 9 924
90 % 1 9 947
70 % 1 9 988
50 % 1 14 862
40 % 1 14 892
30 % 1 14 885
Entity #3 | Chains: E,H
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 682
95 % 1 8 953
90 % 1 8 975
70 % 1 8 1016
50 % 1 8 1057
40 % 1 8 1084
30 % 1 8 1059
Entity #4 | Chains: F,I
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 755
95 % 1 7 1042
90 % 1 7 1064
70 % 1 7 1106
50 % 1 7 1153
40 % 1 7 1178
30 % 1 7 1152
Entity #5 | Chains: G,J
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 684
95 % 1 8 956
90 % 1 8 978
70 % 1 8 1019
50 % 1 12 917
40 % 1 13 907
30 % 1 13 899
Entity #6 | Chains: P,Q
ICLn protein protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39688
95 % 1 1 29813
90 % 1 1 28568
70 % 1 1 25612
50 % 1 1 22007
40 % 1 1 19408
30 % 1 1 16427

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.