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An Information Portal to 108263 Biological Macromolecular Structures

The 6S snRNP assembly intermediate
Sequence Clustering and Redundancy Reduction Results
4F7U
Sequence Clusters for the Sequence Entities in PDB 4F7U
Entity #1: Chains: A,C - Small nuclear ribonucleoprotein Sm D1 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 699
95% 1 7 975
90% 1 7 994
70% 1 7 1024
50% 1 7 1061
40% 1 7 1089
30% 1 7 1064
Entity #2: Chains: B,D - Small nuclear ribonucleoprotein Sm D2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 601
95% 1 8 861
90% 1 8 888
70% 1 8 921
50% 1 8 967
40% 1 8 995
30% 1 8 977
Entity #3: Chains: E,H - Small nuclear ribonucleoprotein E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 632
95% 1 7 898
90% 1 7 921
70% 1 7 952
50% 1 7 996
40% 1 7 1023
30% 1 7 1004
Entity #4: Chains: F,I - Small nuclear ribonucleoprotein F protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 717
95% 1 6 1005
90% 1 6 1023
70% 1 6 1047
50% 1 6 1091
40% 1 6 1123
30% 1 6 1100
Entity #5: Chains: G,J - Small nuclear ribonucleoprotein G protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 637
95% 1 7 903
90% 1 7 925
70% 1 7 956
50% 1 7 999
40% 1 7 1026
30% 1 7 1007
Entity #6: Chains: P,Q - ICLn protein protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 35856
95% 1 1 27073
90% 1 1 26028
70% 1 1 23434
50% 1 1 20216
40% 1 1 17884
30% 1 1 15187
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.