POP-OUT | CLOSE

An Information Portal to 107620 Biological Macromolecular Structures

The 6S snRNP assembly intermediate
Sequence Clustering and Redundancy Reduction Results
4F7U
Sequence Clusters for the Sequence Entities in PDB 4F7U
Entity #1: Chains: A,C - Small nuclear ribonucleoprotein Sm D1 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 693
95% 1 7 964
90% 1 7 982
70% 1 7 1013
50% 1 7 1049
40% 1 7 1079
30% 1 7 1058
Entity #2: Chains: B,D - Small nuclear ribonucleoprotein Sm D2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 596
95% 1 8 854
90% 1 8 882
70% 1 8 917
50% 1 8 960
40% 1 8 993
30% 1 8 973
Entity #3: Chains: E,H - Small nuclear ribonucleoprotein E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 627
95% 1 7 890
90% 1 7 911
70% 1 7 945
50% 1 7 988
40% 1 7 1018
30% 1 7 999
Entity #4: Chains: F,I - Small nuclear ribonucleoprotein F protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 710
95% 1 6 991
90% 1 6 1009
70% 1 6 1034
50% 1 6 1080
40% 1 6 1114
30% 1 6 1094
Entity #5: Chains: G,J - Small nuclear ribonucleoprotein G protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 631
95% 1 7 894
90% 1 7 914
70% 1 7 948
50% 1 7 990
40% 1 7 1020
30% 1 7 1001
Entity #6: Chains: P,Q - ICLn protein protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 35556
95% 1 1 26820
90% 1 1 25786
70% 1 1 23261
50% 1 1 20078
40% 1 1 17761
30% 1 1 15082
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.