POP-OUT | CLOSE
 
Macromolecular Machine 6
Sequence Clustering and Redundancy Reduction Results
4F7U
Sequence Clusters for the Sequence Entities in PDB 4F7U
Entity #1: Chains: A,C - Small nuclear ribonucleoprotein Sm D1 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 12 584
95% 1 12 837
90% 1 12 862
70% 1 12 895
50% 1 12 948
40% 1 12 976
30% 1 12 959
Entity #2: Chains: B,D - Small nuclear ribonucleoprotein Sm D2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 12 585
95% 1 12 838
90% 1 12 863
70% 1 12 896
50% 1 12 950
40% 1 12 978
30% 1 12 961
Entity #3: Chains: E,H - Small nuclear ribonucleoprotein E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 11 601
95% 1 11 863
90% 1 11 887
70% 1 11 913
50% 1 11 978
40% 1 11 1007
30% 1 11 992
Entity #4: Chains: F,I - Small nuclear ribonucleoprotein F protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 11 602
95% 1 11 864
90% 1 11 888
70% 1 11 914
50% 1 11 979
40% 1 11 1009
30% 1 11 994
Entity #5: Chains: G,J - Small nuclear ribonucleoprotein G protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 11 604
95% 1 11 866
90% 1 11 890
70% 1 11 917
50% 1 11 982
40% 1 11 1012
30% 1 11 997
Entity #6: Chains: P,Q - ICLn protein protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 33800
95% 1 1 25594
90% 1 1 24637
70% 1 1 22248
50% 1 1 19250
40% 1 1 17028
30% 1 1 14465
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.