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An Information Portal to 111749 Biological Macromolecular Structures

The 6S snRNP assembly intermediate
Sequence Clustering and Redundancy Reduction Results
4F7U
Sequence Clusters for the Sequence Entities in PDB 4F7U
Entity #1: Chains: A,C - Small nuclear ribonucleoprotein Sm D1 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 728
95% 1 7 1010
90% 1 7 1030
70% 1 7 1064
50% 1 7 1109
40% 1 7 1133
30% 1 7 1103
Entity #2: Chains: B,D - Small nuclear ribonucleoprotein Sm D2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 626
95% 1 8 895
90% 1 8 925
70% 1 8 961
50% 1 8 1006
40% 1 8 1030
30% 1 8 1005
Entity #3: Chains: E,H - Small nuclear ribonucleoprotein E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 657
95% 1 7 928
90% 1 7 954
70% 1 7 990
50% 1 7 1036
40% 1 7 1061
30% 1 7 1033
Entity #4: Chains: F,I - Small nuclear ribonucleoprotein F protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 746
95% 1 6 1036
90% 1 6 1055
70% 1 6 1082
50% 1 6 1141
40% 1 6 1167
30% 1 6 1145
Entity #5: Chains: G,J - Small nuclear ribonucleoprotein G protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 661
95% 1 7 931
90% 1 7 956
70% 1 7 992
50% 1 7 1038
40% 1 7 1063
30% 1 7 1035
Entity #6: Chains: P,Q - ICLn protein protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37118
95% 1 1 27964
90% 1 1 26844
70% 1 1 24126
50% 1 1 20783
40% 1 1 18374
30% 1 1 15590
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.