Sequence Similarity Clusters for the Entities in PDB 4F7U

Entity #1 | Chains: A,C
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 748
95 % 1 11 1019 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 1 11 1046
70 % 1 12 1055
50 % 1 12 1092
40 % 1 12 1105
30 % 1 26 760
Entity #2 | Chains: B,D
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 691
95 % 1 12 942 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.8
PDBFlex
90 % 1 12 976
70 % 1 12 1006
50 % 1 26 710
40 % 1 26 736
30 % 1 26 734
Entity #3 | Chains: E,H
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 703
95 % 1 11 964 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.1
PDBFlex
90 % 1 11 998
70 % 1 11 1034
50 % 1 11 1078
40 % 1 11 1086
30 % 1 11 1068
Entity #4 | Chains: F,I
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 762
95 % 1 10 1050 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 1 10 1073
70 % 1 10 1112
50 % 1 10 1151
40 % 1 10 1166
30 % 1 10 1152
Entity #5 | Chains: G,J
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 704
95 % 1 11 965 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 1 11 999
70 % 1 11 1035
50 % 1 25 728
40 % 1 26 739
30 % 1 26 738
Entity #6 | Chains: P,Q
Methylosome subunit pICln protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45636
95 % 1 1 34252 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 32724
70 % 1 1 29150
50 % 1 1 24883
40 % 1 1 21888
30 % 1 1 18526

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures