Sequence Similarity Clusters for the Entities in PDB 4F7U

Entity #1 | Chains: A,C
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 736
95 % 1 11 1003 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 11 1032
70 % 1 12 1040
50 % 1 12 1078
40 % 1 12 1089
30 % 1 25 760
Entity #2 | Chains: B,D
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 678
95 % 1 12 924 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 1 12 957
70 % 1 12 990
50 % 1 25 706
40 % 1 25 735
30 % 1 25 734
Entity #3 | Chains: E,H
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 691
95 % 1 11 947 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.1
PDBFlex
90 % 1 11 981
70 % 1 11 1018
50 % 1 11 1061
40 % 1 11 1068
30 % 1 11 1046
Entity #4 | Chains: F,I
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 749
95 % 1 10 1033 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.1
PDBFlex
90 % 1 10 1057
70 % 1 10 1095
50 % 1 10 1133
40 % 1 10 1148
30 % 1 10 1131
Entity #5 | Chains: G,J
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 692
95 % 1 11 948 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 1 11 982
70 % 1 11 1019
50 % 1 24 726
40 % 1 25 737
30 % 1 25 735
Entity #6 | Chains: P,Q
Methylosome subunit pICln protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45062
95 % 1 1 33824 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 32341
70 % 1 1 28849
50 % 1 1 24626
40 % 1 1 21668
30 % 1 1 18345

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.