Sequence Similarity Clusters for the Entities in PDB 4F7E

Entity #1 | Chains: A
CD1D antigen, d polypeptide protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27699
95 % 1 2 23187 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 2 22497
70 % 1 2 20628
50 % 43 104 402
40 % 43 104 424
30 % 592 919 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 6079
95 % 4 6 6731 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 6 6721
70 % 618 936 4
50 % 630 958 3
40 % 630 958 7
30 % 630 958 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures