Sequence Similarity Clusters for the Entities in PDB 4F7C

Entity #1 | Chains: A,C
CD1D antigen, d polypeptide protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27344
95 % 2 2 22893 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 2 22219
70 % 2 2 20388
50 % 76 99 418
40 % 76 99 445
30 % 798 909 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 5996
95 % 6 6 6642 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 6 6 6624
70 % 818 924 4
50 % 833 946 3
40 % 833 946 7
30 % 833 946 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures