Sequence Similarity Clusters for the Entities in PDB 4F5Q

Entity #1 | Chains: A
DNA polymerase beta protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 315 90
95 % 192 349 76 Flexibility: Medium
Max RMSD: 14.0, Avg RMSD: 3.0
PDBFlex
90 % 192 349 81
70 % 192 349 101
50 % 192 349 135
40 % 192 349 151
30 % 281 479 115
Entity #2 | Chains: D
DNA (5'-D(P*GP*TP*CP*GP*G)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
DNA (5'-D(P*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: T
DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures