Sequence Similarity Clusters for the Entities in PDB 4F58

Entity #1 | Chains: L,M,N,O
Light chain of Fab of a neutralizing antibody L3 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22238
95 % 2 2 14975 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 47 93 231
70 % 1279 2479 1
50 % 2613 5021 1
40 % 2613 5021 1
30 % 3019 5951 1
Entity #2 | Chains: H,I,J,K
Heavy chain of Fab of a neutralizing antibody L3 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15917
95 % 2 2 14880 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 14629
70 % 1268 2429 2
50 % 2614 5021 1
40 % 2614 5021 1
30 % 3020 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures