Sequence Similarity Clusters for the Entities in PDB 4ES4

Entity #1 | Chains: A,C,E,G
Putative cyclic di-GMP regulator CdgR protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12297
95 % 2 2 11873 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 2 2 11703
70 % 2 2 11040
50 % 2 2 9897
40 % 2 2 8978
30 % 3 3 6213
Entity #2 | Chains: B,D,F,H
Flagellar transcriptional regulator FlhD protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6536
95 % 3 3 7079 Flexibility: Low
Max RMSD: 7.0, Avg RMSD: 1.5
PDBFlex
90 % 3 3 7042
70 % 4 4 5746
50 % 4 4 5397
40 % 4 4 5068
30 % 4 4 4555

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.