Sequence Similarity Clusters for the Entities in PDB 4ES4

Entity #1 | Chains: A,C,E,G
Putative cyclic di-GMP regulator CdgR protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12696
95 % 2 2 12257 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 2 12086
70 % 2 2 11410
50 % 2 2 10200
40 % 2 2 9251
30 % 3 3 6401
Entity #2 | Chains: B,D,F,H
Flagellar transcriptional regulator FlhD protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6740
95 % 3 3 7319 Flexibility: Low
Max RMSD: 7.0, Avg RMSD: 1.5
PDBFlex
90 % 3 3 7271
70 % 4 4 5931
50 % 4 4 5561
40 % 4 4 5225
30 % 4 4 4689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.