Sequence Similarity Clusters for the Entities in PDB 4ES4

Entity #1 | Chains: A,C,E,G
Putative cyclic di-GMP regulator CdgR protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13001
95 % 2 2 12521 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 2 12344
70 % 2 2 11655
50 % 2 2 10418
40 % 2 2 9447
30 % 3 3 6534
Entity #2 | Chains: B,D,F,H
Flagellar transcriptional regulator FlhD protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6897
95 % 3 3 7478 Flexibility: Low
Max RMSD: 7.0, Avg RMSD: 1.5
PDBFlex
90 % 3 3 7433
70 % 4 4 6055
50 % 4 4 5675
40 % 4 4 5333
30 % 4 4 4783

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures