Sequence Similarity Clusters for the Entities in PDB 4ES4

Entity #1 | Chains: A,C,E,G
Putative cyclic di-GMP regulator CdgR protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12473
95 % 2 2 11943 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 2 11771
70 % 2 2 11117
50 % 2 2 9964
40 % 2 2 9015
30 % 3 3 6866
Entity #2 | Chains: B,D,F,H
Flagellar transcriptional regulator FlhD protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7457
95 % 3 3 7540 Flexibility: Low
Max RMSD: 7.0, Avg RMSD: 1.5
PDBFlex
90 % 3 3 7110
70 % 4 4 6189
50 % 4 4 5787
40 % 4 4 5392
30 % 4 4 4747

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures