Sequence Similarity Clusters for the Entities in PDB 4EKD

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25288
95 % 2 11 3863 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.1
PDBFlex
90 % 2 11 3901
70 % 2 11 3847
50 % 41 77 410
40 % 45 97 345
30 % 47 99 336
Entity #2 | Chains: B
Regulator of G-protein signaling 2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 22039
95 % 2 4 14265 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 2 4 13994
70 % 2 4 13130
50 % 9 16 1995
40 % 16 28 1248
30 % 18 33 1102

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.