Sequence Similarity Clusters for the Entities in PDB 4EKD

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26698
95 % 2 11 4075 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 11 4112
70 % 2 11 4060
50 % 41 77 440
40 % 45 98 387
30 % 47 100 373
Entity #2 | Chains: B
Regulator of G-protein signaling 2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 23298
95 % 2 4 15009
90 % 2 4 14736
70 % 2 4 13825
50 % 9 16 2110
40 % 16 28 1311
30 % 18 33 1162

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures