Sequence Similarity Clusters for the Entities in PDB 4EKD

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27869
95 % 2 11 4456 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.0
PDBFlex
90 % 2 11 4348
70 % 2 11 4338
50 % 46 106 364
40 % 48 108 377
30 % 48 108 377
Entity #2 | Chains: B
Regulator of G-protein signaling 2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 23018
95 % 2 4 15550 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 2 4 15219
70 % 2 4 14248
50 % 9 16 2179
40 % 14 28 1336
30 % 18 33 1190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures