Sequence Similarity Clusters for the Entities in PDB 4EKD

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27055
95 % 2 11 4133 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 11 4176
70 % 2 11 4114
50 % 41 77 445
40 % 45 98 402
30 % 47 100 388
Entity #2 | Chains: B
Regulator of G-protein signaling 2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 23637
95 % 2 4 15221
90 % 2 4 14939
70 % 2 4 14006
50 % 9 16 2136
40 % 16 28 1321
30 % 18 33 1177

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures