Sequence Similarity Clusters for the Entities in PDB 4EKC

Entity #1 | Chains: A,C
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26074
95 % 11 11 3975 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 11 11 4013
70 % 11 11 3962
50 % 75 77 423
40 % 93 97 360
30 % 95 99 351
Entity #2 | Chains: B,D
Regulator of G-protein signaling 2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 22732
95 % 4 4 14690 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 4 4 14417
70 % 4 4 13528
50 % 14 16 2051
40 % 21 28 1281
30 % 23 33 1138

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.