Sequence Similarity Clusters for the Entities in PDB 4EKC

Entity #1 | Chains: A,C
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25256
95 % 11 11 3856 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.1
PDBFlex
90 % 11 11 3893
70 % 11 11 3839
50 % 75 77 410
40 % 93 97 343
30 % 95 99 335
Entity #2 | Chains: B,D
Regulator of G-protein signaling 2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 22014
95 % 4 4 14247 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 4 13976
70 % 4 4 13112
50 % 14 16 1989
40 % 21 28 1247
30 % 23 33 1101

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.