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Crystal structure of the bacterial ribosome ram mutation G299A.This entry contains the 50s ribosomal subunit of the first 70s molecule in the asymmetric unit.
Sequence Clustering and Redundancy Reduction Results
4EJB
Sequence Clusters for the Sequence Entities in PDB 4EJB
Entity #1: Chains: A - 23S rRNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: N - 50S RIBOSOMAL PROTEIN L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 159 71
95% 100 159 120
90% 100 159 128
70% 100 159 148
50% 139 278 85
40% 139 278 109
30% 139 279 131
Entity #11: Chains: O - 50S RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 145 88
95% 100 164 106
90% 100 164 114
70% 104 186 112
50% 144 309 58
40% 144 310 76
30% 213 415 54
Entity #12: Chains: P - 50S RIBOSOMAL PROTEIN L15 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 164 62
95% 100 164 104
90% 100 164 112
70% 100 164 133
50% 100 166 171
40% 143 298 91
30% 212 407 61
Entity #13: Chains: Q - 50S RIBOSOMAL PROTEIN L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 149 83
95% 100 165 98
90% 100 165 106
70% 104 190 108
50% 143 300 68
40% 143 300 90
30% 143 300 110
Entity #14: Chains: R - 50S RIBOSOMAL PROTEIN L17 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 169 49
95% 101 169 86
90% 101 169 95
70% 101 169 115
50% 144 300 59
40% 144 302 77
30% 144 304 99
Entity #15: Chains: S - 50S RIBOSOMAL PROTEIN L18 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 143 100
95% 98 143 143
90% 98 143 155
70% 98 143 181
50% 143 297 69
40% 143 297 93
30% 143 297 113
Entity #16: Chains: T - 50S RIBOSOMAL PROTEIN L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 148 85
95% 100 164 105
90% 100 164 113
70% 100 164 134
50% 100 164 176
40% 100 164 208
30% 100 164 227
Entity #17: Chains: U - 50S RIBOSOMAL PROTEIN L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 156 75
95% 100 164 107
90% 100 164 115
70% 100 164 135
50% 144 303 61
40% 144 304 79
30% 144 304 101
Entity #18: Chains: V - 50S RIBOSOMAL PROTEIN L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 164 64
95% 100 164 109
90% 100 164 117
70% 100 164 137
50% 104 192 143
40% 143 298 92
30% 143 298 112
Entity #19: Chains: W - 50S RIBOSOMAL PROTEIN L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 171 52
95% 102 172 87
90% 102 172 98
70% 102 172 119
50% 141 283 81
40% 141 283 105
30% 141 285 125
Entity #2: Chains: B - 5S rRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: X - 50S RIBOSOMAL PROTEIN L23 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 165 57
95% 100 165 99
90% 100 165 107
70% 100 165 129
50% 104 189 148
40% 143 304 82
30% 210 382 71
Entity #21: Chains: Y - 50S RIBOSOMAL PROTEIN L24 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 164 63
95% 100 164 108
90% 100 164 116
70% 100 164 136
50% 100 166 172
40% 139 278 110
30% 139 280 130
Entity #22: Chains: Z - 50S RIBOSOMAL PROTEIN L25 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 164 60
95% 101 165 94
90% 101 165 102
70% 101 165 127
50% 101 165 170
40% 101 165 203
30% 101 165 223
Entity #23: Chains: 0 - 50S RIBOSOMAL PROTEIN L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 149 78
95% 101 165 92
90% 101 165 101
70% 101 165 125
50% 144 301 63
40% 144 301 83
30% 144 301 103
Entity #24: Chains: 1 - 50S RIBOSOMAL PROTEIN L28 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 139 107
95% 100 161 118
90% 100 161 126
70% 100 161 145
50% 100 161 182
40% 100 161 214
30% 100 161 232
Entity #25: Chains: 2 - 50S RIBOSOMAL PROTEIN L29 protein, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 152 79
95% 100 155 124
90% 100 155 132
70% 100 155 154
50% 100 155 197
40% 139 273 115
30% 143 297 114
Entity #26: Chains: 3 - 50S RIBOSOMAL PROTEIN L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 169 54
95% 101 169 91
90% 101 169 100
70% 101 169 122
50% 101 169 167
40% 144 302 86
30% 144 302 106
Entity #27: Chains: 4 - 50S RIBOSOMAL PROTEIN L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 134 110
95% 97 134 160
90% 97 134 172
70% 97 134 203
50% 98 172 166
40% 98 172 194
30% 98 172 217
Entity #28: Chains: 5 - 50S RIBOSOMAL PROTEIN L32 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 148 86
95% 100 156 123
90% 100 156 131
70% 100 156 152
50% 104 188 150
40% 143 295 96
30% 143 295 117
Entity #29: Chains: 6 - 50S RIBOSOMAL PROTEIN L33 protein, length: 54 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 162 69
95% 100 162 115
90% 100 162 123
70% 100 162 143
50% 100 163 180
40% 142 293 98
30% 142 293 119
Entity #3: Chains: C - 50S RIBOSOMAL PROTEIN L1 protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 68 312
95% 49 92 297
90% 49 93 312
70% 49 93 333
50% 50 130 242
40% 50 130 266
30% 55 172 208
Entity #30: Chains: 7 - 50S RIBOSOMAL PROTEIN L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 164 66
95% 100 164 111
90% 100 164 119
70% 100 164 139
50% 100 164 177
40% 100 164 209
30% 100 164 228
Entity #31: Chains: 8 - 50S RIBOSOMAL PROTEIN L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 164 65
95% 100 164 110
90% 100 164 118
70% 100 164 138
50% 104 190 146
40% 104 190 174
30% 104 190 194
Entity #32: Chains: 9 - 50S RIBOSOMAL PROTEIN L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 118 129
95% 70 118 188
90% 70 118 200
70% 74 144 180
50% 113 251 102
40% 113 251 128
30% 113 251 149
Entity #4: Chains: D - 50S RIBOSOMAL PROTEIN L2 protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 164 58
95% 100 164 100
90% 100 164 108
70% 104 186 111
50% 143 296 70
40% 143 296 94
30% 143 296 115
Entity #5: Chains: E - 50S RIBOSOMAL PROTEIN L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 164 59
95% 100 164 102
90% 100 164 110
70% 100 164 131
50% 143 301 67
40% 143 301 89
30% 143 302 108
Entity #6: Chains: F - 50S RIBOSOMAL PROTEIN L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 148 84
95% 100 164 101
90% 100 164 109
70% 100 164 130
50% 104 191 145
40% 104 191 173
30% 144 303 104
Entity #7: Chains: G - 50S RIBOSOMAL PROTEIN L5 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 149 81
95% 101 165 95
90% 101 165 103
70% 105 187 109
50% 145 301 65
40% 145 301 85
30% 145 301 105
Entity #8: Chains: H - 50S RIBOSOMAL PROTEIN L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 164 61
95% 100 164 103
90% 100 164 111
70% 100 164 132
50% 104 196 136
40% 143 305 80
30% 212 410 58
Entity #9: Chains: I - 50S RIBOSOMAL PROTEIN L9 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 110 144
95% 87 132 164
90% 87 132 176
70% 87 132 207
50% 88 137 235
40% 119 241 132
30% 119 241 152
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.