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Crystal structure of the bacterial ribosome ram mutation G299A. This entry contains the 30s ribosomal subunit of the Second 70s molecule in the asymmetric unit
Sequence Clustering and Redundancy Reduction Results
4EJA
Sequence Clusters for the Sequence Entities in PDB 4EJA
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 265 27
95% 172 267 47
90% 172 267 49
70% 172 267 59
50% 219 384 34
40% 219 384 46
30% 219 389 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 268 25
95% 172 268 43
90% 172 268 45
70% 172 268 55
50% 213 378 41
40% 251 454 34
30% 251 454 44
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 237 35
95% 172 275 35
90% 172 275 37
70% 213 390 24
50% 213 390 33
40% 213 390 45
30% 213 390 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 269 22
95% 172 269 41
90% 172 269 43
70% 172 269 53
50% 213 380 38
40% 213 380 51
30% 249 452 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 267 26
95% 172 267 48
90% 172 267 50
70% 172 267 60
50% 172 267 93
40% 172 267 119
30% 172 267 141
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 271 20
95% 176 276 32
90% 176 276 34
70% 176 276 47
50% 220 391 32
40% 220 391 43
30% 220 391 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 263 28
95% 172 268 45
90% 172 268 47
70% 172 268 57
50% 172 268 91
40% 172 268 117
30% 213 378 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 170 54
95% 171 262 49
90% 172 266 51
70% 172 266 61
50% 172 266 94
40% 172 266 120
30% 172 266 142
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 183 48
95% 164 232 61
90% 164 232 64
70% 164 232 78
50% 164 232 115
40% 164 232 139
30% 164 232 160
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 234 37
95% 164 234 59
90% 164 234 63
70% 164 234 77
50% 214 381 37
40% 214 381 49
30% 214 381 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 268 23
95% 172 269 38
90% 172 269 41
70% 172 269 51
50% 172 269 90
40% 213 378 53
30% 213 378 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 206 42
95% 172 267 46
90% 172 267 48
70% 172 267 58
50% 172 267 92
40% 172 267 118
30% 172 267 140
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 249 34
95% 172 249 53
90% 172 249 55
70% 172 249 67
50% 172 249 104
40% 172 249 132
30% 172 249 151
Entity #22: Chains: V - P-site tRNA FMET rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W,Y - E-SITE TRNA PHE OR A-SITE TRNA PHE rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - mRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 230 38
95% 163 230 63
90% 163 230 66
70% 163 230 80
50% 178 293 73
40% 178 293 99
30% 178 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 261 29
95% 172 269 39
90% 172 269 42
70% 172 269 52
50% 213 378 39
40% 213 379 52
30% 213 379 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 268 24
95% 172 268 42
90% 172 268 44
70% 172 268 54
50% 214 382 36
40% 214 382 48
30% 214 384 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 273 18
95% 180 279 29
90% 180 279 30
70% 180 279 44
50% 180 279 84
40% 180 279 106
30% 208 328 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 272 19
95% 173 273 36
90% 173 273 38
70% 173 273 49
50% 201 323 56
40% 201 324 73
30% 201 324 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 268 21
95% 172 268 40
90% 173 272 39
70% 173 272 50
50% 216 384 35
40% 217 386 47
30% 254 459 43
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 155 76
95% 172 268 44
90% 172 268 46
70% 172 268 56
50% 213 378 40
40% 213 378 54
30% 249 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.