Sequence Similarity Clusters for the Entities in PDB 4EGY

Entity #1 | Chains: A,B
Arabinose metabolism transcriptional repressor protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6856
95 % 5 5 7422 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.3
PDBFlex
90 % 5 5 7367
70 % 5 5 7185
50 % 5 5 6623
40 % 6 6 4429
30 % 6 6 4067
Entity #2 | Chains: T
5'-D(*TP*AP*AP*TP*AP*TP*TP*TP*GP*TP*AP*CP*GP*AP*AP*CP*AP*AP*TP*TP*T)-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: U
5'-D(*AP*AP*AP*AP*TP*TP*GP*TP*TP*CP*GP*TP*AP*CP*AP*AP*AP*TP*AP*TP*T)-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures