Sequence Similarity Clusters for the Entities in PDB 4EGY

Entity #1 | Chains: A,B
Arabinose metabolism transcriptional repressor protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 7497
95 % 5 5 7584 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.3
PDBFlex
90 % 5 5 7526
70 % 5 5 7310
50 % 5 5 6748
40 % 6 6 4306
30 % 6 6 3884
Entity #2 | Chains: T
5'-D(*TP*AP*AP*TP*AP*TP*TP*TP*GP*TP*AP*CP*GP*AP*AP*CP*AP*AP*TP*TP*T)-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: U
5'-D(*AP*AP*AP*AP*TP*TP*GP*TP*TP*CP*GP*TP*AP*CP*AP*AP*AP*TP*AP*TP*T)-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures