Sequence Similarity Clusters for the Entities in PDB 4EFA

Entity #1 | Chains: C
V-type proton ATPase subunit C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30050
95 % 2 2 24897 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 24057
70 % 2 2 21874
50 % 2 2 18903
40 % 2 2 16833
30 % 2 2 14395
Entity #2 | Chains: G
V-type proton ATPase subunit G protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 1307
95 % 2 10 1759 Flexibility: Medium
Max RMSD: 8.8, Avg RMSD: 3.2
PDBFlex
90 % 2 10 1799
70 % 2 10 1808
50 % 2 10 1848
40 % 2 10 1849
30 % 2 10 1790
Entity #3 | Chains: E
V-type proton ATPase subunit E protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 1289
95 % 2 10 1746 Flexibility: Low
Max RMSD: 8.5, Avg RMSD: 2.9
PDBFlex
90 % 2 10 1786
70 % 2 10 1796
50 % 2 10 1837
40 % 2 10 1837
30 % 2 10 1782

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures