Sequence Similarity Clusters for the Entities in PDB 4EFA

Entity #1 | Chains: C
V-type proton ATPase subunit C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29026
95 % 2 2 24080 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 23297
70 % 2 2 21218
50 % 2 2 18361
40 % 2 2 16369
30 % 2 2 14000
Entity #2 | Chains: G
V-type proton ATPase subunit G protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 1251
95 % 2 10 1667 Flexibility: Medium
Max RMSD: 8.8, Avg RMSD: 3.2
PDBFlex
90 % 2 10 1703
70 % 2 10 1727
50 % 2 10 1770
40 % 2 10 1777
30 % 2 10 1722
Entity #3 | Chains: E
V-type proton ATPase subunit E protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 1239
95 % 2 10 1657 Flexibility: Low
Max RMSD: 8.5, Avg RMSD: 2.9
PDBFlex
90 % 2 10 1693
70 % 2 10 1717
50 % 2 10 1758
40 % 2 10 1765
30 % 2 10 1714

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.