Sequence Similarity Clusters for the Entities in PDB 4EFA

Entity #1 | Chains: C
V-type proton ATPase subunit C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25824
95 % 2 2 22768 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 22038
70 % 2 2 20133
50 % 2 2 17995
40 % 2 2 15904
30 % 2 2 13332
Entity #2 | Chains: G
V-type proton ATPase subunit G protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 1505
95 % 2 10 1777 Flexibility: Medium
Max RMSD: 8.8, Avg RMSD: 3.2
PDBFlex
90 % 2 10 1820
70 % 2 10 1835
50 % 2 10 1869
40 % 2 10 1859
30 % 2 10 1794
Entity #3 | Chains: E
V-type proton ATPase subunit E protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 1508
95 % 2 10 1779 Flexibility: Low
Max RMSD: 8.5, Avg RMSD: 2.9
PDBFlex
90 % 2 10 1822
70 % 2 10 1834
50 % 2 10 1870
40 % 2 10 1853
30 % 2 10 1765

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures