Sequence Similarity Clusters for the Entities in PDB 4EAF

Entity #1 | Chains: A
Thymidine phosphorylase protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 9402
95 % 3 12 3746 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 3 12 3818
70 % 3 12 3752
50 % 3 12 3653
40 % 3 21 1641
30 % 3 22 1530

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4EAD 1 A Thymidine phosphorylase 562 2.4.2.4 | Details
2 4LHM 1 A Thymidine phosphorylase 562 2.4.2.4 | Details
3 4EAF 1 A Thymidine phosphorylase 562 2.4.2.4 | Details
4 5EY3 1 A, B Thymidine phosphorylase The A chain contains two residues of the thrombine restriction site (Gly and Ser). In the B chain we could not localize those residues due to poor electron density map of the N-terminal residues. 28901 2.4.2.4 | Details
5 4X46 1 A, B Thymidine phosphorylase 28901 2.4.2.4 | Details
6 4XR5 1 A, B Thymidine phosphorylase 28901 2.4.2.4 | Details
7 4YEK 1 A, B Thymidine phosphorylase 28901 2.4.2.4 | Details
8 4YYY 1 A, B Thymidine phosphorylase 28901 2.4.2.4 | Details
9 2TPT 1 A THYMIDINE PHOSPHORYLASE TETRAGONAL CRYSTAL FORM 562 2.4.2.4 | Details
10 1OTP 1 A THYMIDINE PHOSPHORYLASE 562 2.4.2.4 | Details
11 1AZY 1 A, B THYMIDINE PHOSPHORYLASE MONOCLINIC CRYSTAL FORM 562 2.4.2.4 | Details
12 1TPT 1 A THYMIDINE PHOSPHORYLASE 562 2.4.2.4 | Details