Sequence Similarity Clusters for the Entities in PDB 4E5X

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 199 53
95 % 112 249 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 125 297 36
70 % 288 705 6
50 % 288 710 6
40 % 304 761 10
30 % 327 881 15
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 270 607 2
95 % 296 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 298 660 4
70 % 350 898 4
50 % 355 920 3
40 % 355 920 8
30 % 355 920 12
Entity #3 | Chains: C,F
Protein Tax-1 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,H
Early E3 18.5 kDa glycoprotein protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46755
95 % 1 1 34964 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 33417
70 % 1 1 29751
50 % 1 1 25408
40 % 1 1 22394
30 % 1 1 18960

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.