Sequence Similarity Clusters for the Entities in PDB 4E06

Entity #1 | Chains: L
Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 318 335 45
95 % 319 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 319 336 66
70 % 320 338 77
50 % 320 338 102
40 % 320 338 126
30 % 320 338 137
Entity #2 | Chains: H
Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 277 290 55
95 % 355 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 360 381 39
70 % 378 405 45
50 % 378 405 81
40 % 1615 1695 4
30 % 1751 1845 6
Entity #3 | Chains: I
Salivary anti-thrombin peptide anophelin protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 48641
95 % 2 2 36331 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 34711
70 % 2 2 30872
50 % 2 2 26395
40 % 2 2 23304
30 % 2 2 19780

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.