Sequence Similarity Clusters for the Entities in PDB 4E06

Entity #1 | Chains: L
Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 321 338 45
95 % 322 339 62 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 322 339 66
70 % 323 341 78
50 % 323 341 107
40 % 323 341 130
30 % 323 341 137
Entity #2 | Chains: H
Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 277 290 58
95 % 358 377 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 363 384 39
70 % 381 408 46
50 % 381 408 84
40 % 1637 1719 4
30 % 1773 1869 6
Entity #3 | Chains: I
Salivary anti-thrombin peptide anophelin protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 49340
95 % 2 2 36843 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 35180
70 % 2 2 31262
50 % 2 2 26724
40 % 2 2 23587
30 % 2 2 20018

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures