Sequence Similarity Clusters for the Entities in PDB 4E05

Entity #1 | Chains: L
Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 241 338 45
95 % 241 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 241 339 67
70 % 241 341 78
50 % 241 341 107
40 % 241 341 131
30 % 241 341 138
Entity #2 | Chains: H
Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 213 290 59
95 % 267 377 40 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 270 384 40
70 % 275 408 46
50 % 275 408 84
40 % 1276 1721 4
30 % 1371 1871 6
Entity #3 | Chains: I
Salivary anti-thrombin peptide anophelin protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49685
95 % 1 2 37070 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 35383
70 % 1 2 31436
50 % 1 2 26851
40 % 1 2 23700
30 % 1 2 20101

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures