Sequence Similarity Clusters for the Entities in PDB 4E05

Entity #1 | Chains: L
Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 241 338 45
95 % 241 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 241 339 67
70 % 241 341 78
50 % 241 341 109
40 % 241 341 132
30 % 241 341 140
Entity #2 | Chains: H
Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 213 290 75
95 % 267 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 270 384 48
70 % 275 408 46
50 % 275 408 84
40 % 1369 1863 4
30 % 1378 1885 6
Entity #3 | Chains: I
Salivary anti-thrombin peptide anophelin protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 50259
95 % 1 2 37489 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 35767
70 % 1 2 31766
50 % 1 2 27120
40 % 1 2 23942
30 % 1 2 20309

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures