Sequence Similarity Clusters for the Entities in PDB 4E05

Entity #1 | Chains: L
Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 238 335 45
95 % 238 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 238 336 66
70 % 238 338 78
50 % 238 338 106
40 % 238 338 129
30 % 238 338 136
Entity #2 | Chains: H
Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 213 290 57
95 % 264 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 267 381 39
70 % 272 405 46
50 % 272 405 84
40 % 1258 1698 4
30 % 1353 1848 6
Entity #3 | Chains: I
Salivary anti-thrombin peptide anophelin protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48857
95 % 1 2 36497 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 34859
70 % 1 2 30991
50 % 1 2 26494
40 % 1 2 23386
30 % 1 2 19847

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.