Sequence Similarity Clusters for the Entities in PDB 4DX8

Entity #1 | Chains: A,B,D,E
Integrin beta-1-binding protein 1 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 1266
95 % 2 3 1692 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 3 1733
70 % 2 3 1763
50 % 2 3 1810
40 % 2 3 1853
30 % 2 3 1879
Entity #2 | Chains: H,I,J,K
Krev interaction trapped protein 1 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25381
95 % 1 1 22147 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 1 1 21509
70 % 1 1 19764
50 % 1 1 17502
40 % 1 1 16108
30 % 1 1 14482

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures