Sequence Similarity Clusters for the Entities in PDB 4DX8

Entity #1 | Chains: A,B,D,E
Integrin beta-1-binding protein 1 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 1074
95 % 2 3 1456 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 3 1483
70 % 2 3 1490
50 % 2 3 1548
40 % 2 3 1563
30 % 2 3 1532
Entity #2 | Chains: H,I,J,K
Krev interaction trapped protein 1 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21696
95 % 1 1 18794 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 1 1 18314
70 % 1 1 16932
50 % 1 1 14700
40 % 1 1 13087
30 % 1 1 11210

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures