Sequence Similarity Clusters for the Entities in PDB 4DX8

Entity #1 | Chains: A,B,D,E
Integrin beta-1-binding protein 1 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 1278
95 % 2 3 1522 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 3 1549
70 % 2 3 1567
50 % 2 3 1620
40 % 2 3 1610
30 % 2 3 1590
Entity #2 | Chains: H,I,J,K
Krev interaction trapped protein 1 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22575
95 % 1 1 20215 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 1 1 19637
70 % 1 1 18015
50 % 1 1 15646
40 % 1 1 13901
30 % 1 1 11679

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures