Sequence Similarity Clusters for the Entities in PDB 4DW2

Entity #1 | Chains: U
Urokinase-type plasminogen activator protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 40 775
95 % 103 106 276
90 % 103 106 289
70 % 103 106 311
50 % 103 106 332
40 % 113 117 323
30 % 1659 1697 6
Entity #2 | Chains: H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52132
95 % 2 2 19686
90 % 2 2 19067
70 % 1522 1790 1
50 % 3140 3692 1
40 % 3141 3693 1
30 % 3689 4355 1
Entity #3 | Chains: L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23425
95 % 13 20 2290
90 % 88 134 130
70 % 1300 1526 3
50 % 3141 3692 1
40 % 3142 3693 1
30 % 3690 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.