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The crystal structure of uPA in complex with the Fab fragment of mAb-112
Sequence Clustering and Redundancy Reduction Results
4DW2
Sequence Clusters for the Sequence Entities in PDB 4DW2
Entity #1: Chains: U - Urokinase-type plasminogen activator protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 40 690
95% 94 97 266
90% 94 97 279
70% 94 97 300
50% 94 97 337
40% 101 105 317
30% 1560 1598 5
Entity #2: Chains: H - Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47370
95% 2 2 17856
90% 2 2 17332
70% 1318 1524 2
50% 2735 3162 1
40% 2736 3163 1
30% 3211 3739 1
Entity #3: Chains: L - Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21152
95% 6 7 5882
90% 78 118 89
70% 1152 1330 3
50% 2736 3162 1
40% 2737 3163 1
30% 3212 3739 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.