Sequence Similarity Clusters for the Entities in PDB 4DW2

Entity #1 | Chains: U
Urokinase-type plasminogen activator protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 45 825
95 % 109 112 320 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 109 112 338
70 % 114 117 364
50 % 114 117 424
40 % 124 128 396
30 % 1822 1870 6
Entity #2 | Chains: H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62155
95 % 2 2 23653 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 22857
70 % 1950 2366 2
50 % 4040 4892 1
40 % 4040 4892 1
30 % 4770 5759 1
Entity #3 | Chains: L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28350
95 % 13 20 2881 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 98 148 140
70 % 1992 2416 1
50 % 4041 4892 1
40 % 4041 4892 1
30 % 4771 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures