Sequence Similarity Clusters for the Entities in PDB 4DW2

Entity #1 | Chains: U
Urokinase-type plasminogen activator protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 18 3168
95 % 109 112 333 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 109 112 349
70 % 114 117 369
50 % 114 117 434
40 % 1835 1885 4
30 % 1847 1899 7
Entity #2 | Chains: H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28187
95 % 2 2 24691 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.1
PDBFlex
90 % 2 2 23859
70 % 2051 2511 2
50 % 4238 5180 1
40 % 4763 5834 1
30 % 5936 7269 1
Entity #3 | Chains: L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28188
95 % 2 2 24692 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 98 148 146
70 % 2085 2553 1
50 % 4239 5180 1
40 % 4764 5834 1
30 % 5937 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures