Sequence Similarity Clusters for the Entities in PDB 4DW2

Entity #1 | Chains: U
Urokinase-type plasminogen activator protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 40 792
95 % 103 106 284
90 % 103 106 296
70 % 103 106 317
50 % 103 106 339
40 % 113 117 329
30 % 1664 1702 6
Entity #2 | Chains: H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53163
95 % 2 2 20074
90 % 2 2 19451
70 % 1561 1846 1
50 % 3218 3804 1
40 % 3219 3805 1
30 % 3811 4512 1
Entity #3 | Chains: L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23927
95 % 13 20 2344
90 % 88 135 134
70 % 1329 1565 3
50 % 3219 3804 1
40 % 3220 3805 1
30 % 3812 4512 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.