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An Information Portal to 110790 Biological Macromolecular Structures

The crystal structure of uPA in complex with the Fab fragment of mAb-112
Sequence Clustering and Redundancy Reduction Results
4DW2
Sequence Clusters for the Sequence Entities in PDB 4DW2
Entity #1: Chains: U - Urokinase-type plasminogen activator protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 40 733
95% 97 100 278
90% 97 100 290
70% 97 100 311
50% 97 100 338
40% 106 110 328
30% 1611 1649 6
Entity #2: Chains: H - Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49636
95% 2 2 18687
90% 2 2 18127
70% 1417 1656 1
50% 2931 3425 1
40% 2932 3426 1
30% 3444 4043 1
Entity #3: Chains: L - Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22210
95% 13 20 2178
90% 86 132 124
70% 1228 1434 3
50% 2932 3425 1
40% 2933 3426 1
30% 3445 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.