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The crystal structure of uPA in complex with the Fab fragment of mAb-112
Sequence Clustering and Redundancy Reduction Results
4DW2
Sequence Clusters for the Sequence Entities in PDB 4DW2
Entity #1: Chains: U - Urokinase-type plasminogen activator protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 40 705
95% 97 100 268
90% 97 100 281
70% 97 100 299
50% 97 100 331
40% 106 110 317
30% 1592 1630 6
Entity #2: Chains: H - Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48113
95% 2 2 18112
90% 2 2 17574
70% 1336 1548 2
50% 2771 3210 1
40% 2772 3211 1
30% 3253 3793 1
Entity #3: Chains: L - Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21525
95% 6 7 6000
90% 79 119 102
70% 1166 1349 3
50% 2772 3210 1
40% 2773 3211 1
30% 3254 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.