Sequence Similarity Clusters for the Entities in PDB 4DW2

Entity #1 | Chains: U
Urokinase-type plasminogen activator protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 44 803
95 % 108 111 303 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 108 111 318
70 % 113 116 332
50 % 113 116 395
40 % 123 127 354
30 % 1780 1827 6
Entity #2 | Chains: H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59281
95 % 2 2 22456 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.1
PDBFlex
90 % 2 2 21735
70 % 1824 2197 1
50 % 3771 4537 1
40 % 3771 4537 1
30 % 4446 5342 1
Entity #3 | Chains: L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26881
95 % 13 20 2723 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 96 145 141
70 % 1547 1841 2
50 % 3772 4537 1
40 % 3772 4537 1
30 % 4447 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.