Sequence Similarity Clusters for the Entities in PDB 4DW2

Entity #1 | Chains: U
Urokinase-type plasminogen activator protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 44 783
95 % 108 111 293
90 % 108 111 308
70 % 108 111 348
50 % 108 111 409
40 % 118 122 372
30 % 1730 1777 6
Entity #2 | Chains: H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58417
95 % 2 2 22110
90 % 2 2 21410
70 % 1793 2145 1
50 % 3710 4435 1
40 % 3710 4435 1
30 % 4375 5225 1
Entity #3 | Chains: L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26476
95 % 13 20 2685
90 % 96 145 139
70 % 1522 1803 2
50 % 3711 4435 1
40 % 3711 4435 1
30 % 4376 5225 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.