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The crystal structure of uPA in complex with the Fab fragment of mAb-112
Sequence Clustering and Redundancy Reduction Results
4DW2
Sequence Clusters for the Sequence Entities in PDB 4DW2
Entity #1: Chains: U - Urokinase-type plasminogen activator protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 40 740
95% 97 100 287
90% 97 100 299
70% 97 100 320
50% 97 100 347
40% 107 111 327
30% 1626 1664 6
Entity #2: Chains: H - Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50103
95% 2 2 18904
90% 2 2 18323
70% 1433 1682 1
50% 2963 3477 1
40% 2964 3478 1
30% 3482 4103 1
Entity #3: Chains: L - Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22476
95% 13 20 2203
90% 86 132 124
70% 1239 1454 3
50% 2964 3477 1
40% 2965 3478 1
30% 3483 4103 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.