Sequence Similarity Clusters for the Entities in PDB 4DW2

Entity #1 | Chains: U
Urokinase-type plasminogen activator protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 44 759
95 % 108 111 282
90 % 108 111 293
70 % 108 111 335
50 % 108 111 396
40 % 118 122 359
30 % 1710 1753 6
Entity #2 | Chains: H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57224
95 % 2 2 21658
90 % 2 2 20978
70 % 1732 2066 1
50 % 3584 4272 1
40 % 3584 4272 1
30 % 4229 5038 1
Entity #3 | Chains: L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 25918
95 % 13 20 2616
90 % 96 144 134
70 % 1480 1752 2
50 % 3585 4272 1
40 % 3585 4272 1
30 % 4230 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.