Sequence Similarity Clusters for the Entities in PDB 4DW2

Entity #1 | Chains: U
Urokinase-type plasminogen activator protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 45 807
95 % 109 112 315 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 109 112 332
70 % 114 117 352
50 % 114 117 408
40 % 124 128 369
30 % 1798 1846 6
Entity #2 | Chains: H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61012
95 % 2 2 23201 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 22441
70 % 1879 2282 2
50 % 3891 4717 1
40 % 3891 4717 1
30 % 4610 5571 1
Entity #3 | Chains: L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27774
95 % 13 20 2816 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 96 145 144
70 % 1918 2329 1
50 % 3892 4717 1
40 % 3892 4717 1
30 % 4611 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.