Sequence Similarity Clusters for the Entities in PDB 4DVV

Entity #1 | Chains: A,B
clade A/E 93TH057 HIV-1 gp120 core protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 21 1242
95 % 10 59 544 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 10 60 560
70 % 15 180 135
50 % 15 180 164
40 % 15 180 177
30 % 15 183 194

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures