Sequence Similarity Clusters for the Entities in PDB 4DVV

Entity #1 | Chains: A,B
clade A/E 93TH057 HIV-1 gp120 core protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 1146
95 % 10 57 557 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 10 57 584
70 % 15 130 185
50 % 15 130 226
40 % 15 130 243
30 % 15 133 251

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures