Sequence Similarity Clusters for the Entities in PDB 4DVS

Entity #1 | Chains: A,B
clade A/E 93TH057 HIV-1 gp120 core protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 1109
95 % 17 55 520 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 17 55 559
70 % 31 126 179
50 % 31 126 218
40 % 31 126 240
30 % 31 129 245

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.