Sequence Similarity Clusters for the Entities in PDB 4DVR

Entity #1 | Chains: G
glycoprotein gp120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48508
95 % 1 1 34844
90 % 4 12 2354
70 % 70 118 167
50 % 70 118 198
40 % 70 118 214
30 % 70 121 225
Entity #2 | Chains: L
Fab 48d Light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 13127
95 % 59 131 73
90 % 276 475 4
70 % 952 1565 3
50 % 2312 3804 1
40 % 2313 3805 1
30 % 2664 4512 1
Entity #3 | Chains: H
Fab 48d Heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 13078
95 % 3 5 7949
90 % 3 5 7888
70 % 1124 1846 1
50 % 2313 3804 1
40 % 2314 3805 1
30 % 2665 4512 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.