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Crystal structure of YU2 gp120 core in complex with Fab 48d and NBD-557
Sequence Clustering and Redundancy Reduction Results
4DVR
Sequence Clusters for the Sequence Entities in PDB 4DVR
Entity #1: Chains: G - glycoprotein gp120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44537
95% 1 1 32117
90% 4 10 3145
70% 17 29 1108
50% 17 29 1165
40% 17 29 1191
30% 17 31 1087
Entity #2: Chains: L - Fab 48d Light chain protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 11947
95% 52 116 80
90% 245 413 4
70% 844 1388 3
50% 2008 3295 1
40% 2009 3296 1
30% 2290 3893 1
Entity #3: Chains: H - Fab 48d Heavy chain protein, length: 219 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 11904
95% 3 4 11342
90% 3 4 11168
70% 970 1590 2
50% 2009 3295 1
40% 2010 3296 1
30% 2291 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.