Sequence Similarity Clusters for the Entities in PDB 4DVR

Entity #1 | Chains: G
glycoprotein gp120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48905
95 % 1 1 35117
90 % 4 12 2377
70 % 70 120 165
50 % 70 120 196
40 % 70 120 212
30 % 70 123 222
Entity #2 | Chains: L
Fab 48d Light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 13262
95 % 59 131 78
90 % 279 482 4
70 % 963 1583 3
50 % 2336 3846 1
40 % 2337 3847 1
30 % 2704 4574 1
Entity #3 | Chains: H
Fab 48d Heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 13213
95 % 3 5 8036
90 % 3 5 7972
70 % 1135 1866 1
50 % 2337 3846 1
40 % 2338 3847 1
30 % 2705 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.