Sequence Similarity Clusters for the Entities in PDB 4DVR

Entity #1 | Chains: G
Envelope glycoprotein gp120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54973
95 % 1 1 39456
90 % 4 12 2783
70 % 73 126 178
50 % 73 126 221
40 % 73 126 240
30 % 73 129 248
Entity #2 | Chains: L
Fab 48d Light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 15127
95 % 76 165 69
90 % 414 697 3
70 % 1352 2280 1
50 % 2755 4619 1
40 % 2755 4619 1
30 % 3182 5440 1
Entity #3 | Chains: H
Fab 48d Heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 15065
95 % 3 5 9162
90 % 3 5 9076
70 % 1334 2238 2
50 % 2756 4619 1
40 % 2756 4619 1
30 % 3183 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.