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Crystal structure of YU2 gp120 core in complex with Fab 48d and NBD-557
Sequence Clustering and Redundancy Reduction Results
4DVR
Sequence Clusters for the Sequence Entities in PDB 4DVR
Entity #1: Chains: G - glycoprotein gp120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45270
95% 1 1 32616
90% 4 10 3202
70% 17 29 1119
50% 17 29 1187
40% 17 29 1214
30% 17 31 1105
Entity #2: Chains: L - Fab 48d Light chain protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 12185
95% 56 121 72
90% 252 425 4
70% 875 1434 3
50% 2097 3425 1
40% 2098 3426 1
30% 2391 4043 1
Entity #3: Chains: H - Fab 48d Heavy chain protein, length: 219 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 12140
95% 3 4 11545
90% 3 4 11365
70% 1016 1656 1
50% 2098 3425 1
40% 2099 3426 1
30% 2392 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.