Sequence Similarity Clusters for the Entities in PDB 4DVR

Entity #1 | Chains: G
glycoprotein gp120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52679
95 % 1 1 37788
90 % 4 12 2672
70 % 73 126 177
50 % 73 126 216
40 % 73 126 237
30 % 73 129 239
Entity #2 | Chains: L
Fab 48d Light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 14426
95 % 72 154 72
90 % 381 640 3
70 % 1072 1766 2
50 % 2633 4347 1
40 % 2633 4347 1
30 % 3035 5126 1
Entity #3 | Chains: H
Fab 48d Heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 14371
95 % 3 5 8718
90 % 3 5 8636
70 % 1273 2101 1
50 % 2634 4347 1
40 % 2634 4347 1
30 % 3036 5126 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.