Sequence Similarity Clusters for the Entities in PDB 4DVR

Entity #1 | Chains: G
glycoprotein gp120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49180
95 % 1 1 35304
90 % 4 12 2402
70 % 70 120 166
50 % 70 120 196
40 % 70 120 213
30 % 70 123 222
Entity #2 | Chains: L
Fab 48d Light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 13358
95 % 62 136 72
90 % 291 500 4
70 % 983 1609 3
50 % 2378 3902 1
40 % 2379 3903 1
30 % 2747 4631 1
Entity #3 | Chains: H
Fab 48d Heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 13307
95 % 3 5 8081
90 % 3 5 8015
70 % 1156 1894 1
50 % 2379 3902 1
40 % 2380 3903 1
30 % 2748 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.