Sequence Similarity Clusters for the Entities in PDB 4DVR

Entity #1 | Chains: G
Envelope glycoprotein gp120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56882
95 % 1 1 40785
90 % 4 13 2774
70 % 73 129 184
50 % 73 129 226
40 % 73 129 245
30 % 73 132 251
Entity #2 | Chains: L
Fab 48d Light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15747
95 % 97 192 62 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 461 763 2
70 % 1451 2426 1
50 % 2953 4913 1
40 % 2953 4913 1
30 % 3403 5780 1
Entity #3 | Chains: H
Fab 48d Heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15683
95 % 3 5 9472 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 3 5 9373
70 % 1426 2376 2
50 % 2954 4913 1
40 % 2954 4913 1
30 % 3404 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures