Sequence Similarity Clusters for the Entities in PDB 4DVR

Entity #1 | Chains: G
Envelope glycoprotein gp120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55750
95 % 1 1 40015
90 % 4 12 2834
70 % 73 127 181
50 % 73 127 226
40 % 73 127 245
30 % 73 130 249
Entity #2 | Chains: L
Fab 48d Light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15377
95 % 81 170 67 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 432 721 3
70 % 1383 2329 1
50 % 2816 4717 1
40 % 2816 4717 1
30 % 3256 5571 1
Entity #3 | Chains: H
Fab 48d Heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15316
95 % 3 5 9295 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 3 5 9197
70 % 1361 2282 2
50 % 2817 4717 1
40 % 2817 4717 1
30 % 3257 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.