Sequence Similarity Clusters for the Entities in PDB 4DVR

Entity #1 | Chains: G
Envelope glycoprotein gp120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57540
95 % 1 1 41249
90 % 4 13 2812
70 % 74 130 184
50 % 74 130 225
40 % 74 130 242
30 % 74 133 251
Entity #2 | Chains: L
Fab 48d Light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15993
95 % 107 209 56 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 480 788 2
70 % 1482 2474 1
50 % 3016 5011 1
40 % 3016 5011 1
30 % 3516 5941 1
Entity #3 | Chains: H
Fab 48d Heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15930
95 % 3 5 9612 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 3 5 9512
70 % 1457 2424 2
50 % 3017 5011 1
40 % 3017 5011 1
30 % 3517 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures