Sequence Similarity Clusters for the Entities in PDB 4DVG

Entity #1 | Chains: A
Rho-like small GTPase protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64239
95 % 3 3 15028 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 3 3 14745
70 % 3 3 13818
50 % 3 3 12269
40 % 3 3 11103
30 % 3 3 9655
Entity #2 | Chains: B
Diaphanous protein protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56157
95 % 1 1 40606
90 % 1 1 38752
70 % 1 1 34390
50 % 1 1 29373
40 % 1 1 25957
30 % 1 1 22087

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures