Sequence Similarity Clusters for the Entities in PDB 4DVG

Entity #1 | Chains: A
Rho-like small GTPase protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62543
95 % 3 3 14578 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 3 3 14305
70 % 3 3 13427
50 % 3 3 11933
40 % 3 3 10808
30 % 3 3 9398
Entity #2 | Chains: B
Diaphanous protein protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54673
95 % 1 1 39598
90 % 1 1 37819
70 % 1 1 33598
50 % 1 1 28726
40 % 1 1 25385
30 % 1 1 21609

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures