Sequence Similarity Clusters for the Entities in PDB 4DVB

Entity #1 | Chains: A,H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42513
95 % 1 2 24014 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 2 23202
70 % 617 2429 2
50 % 1275 5021 1
40 % 1275 5021 1
30 % 1447 5951 1
Entity #2 | Chains: B,L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28793
95 % 2 20 2929 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 19 148 144
70 % 620 2479 1
50 % 1276 5021 1
40 % 1276 5021 1
30 % 1448 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures