Sequence Similarity Clusters for the Entities in PDB 4DVB

Entity #1 | Chains: A,H
Fab fragment of pro-uPA antibody mAb-112 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41953
95 % 1 2 23687 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 2 22891
70 % 596 2376 2
50 % 1232 4913 1
40 % 1232 4913 1
30 % 1368 5780 1
Entity #2 | Chains: B,L
Fab fragment of pro-uPA antibody mAb-112 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28393
95 % 2 20 2887 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 19 148 140
70 % 599 2426 1
50 % 1233 4913 1
40 % 1233 4913 1
30 % 1369 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures