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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DV7
Sequence Clusters for the Sequence Entities in PDB 4DV7
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 252 29
95% 21 254 48
90% 21 254 51
70% 21 254 63
50% 29 369 34
40% 29 369 48
30% 29 374 67
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 255 27
95% 21 255 44
90% 21 255 47
70% 21 255 59
50% 23 363 42
40% 27 403 39
30% 27 403 53
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 29 959
95% 21 262 36
90% 21 262 38
70% 23 375 24
50% 23 375 33
40% 23 375 47
30% 23 375 71
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 256 24
95% 21 256 42
90% 21 256 45
70% 21 256 57
50% 23 365 39
40% 23 365 53
30% 25 401 57
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 254 28
95% 21 254 49
90% 21 254 52
70% 21 254 64
50% 21 254 99
40% 21 254 124
30% 21 254 144
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 258 21
95% 23 263 35
90% 23 263 37
70% 23 263 48
50% 28 376 32
40% 28 376 45
30% 28 376 69
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 250 31
95% 21 255 46
90% 21 255 49
70% 21 255 61
50% 21 255 97
40% 21 255 122
30% 23 363 78
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 92 219
95% 21 249 51
90% 21 253 53
70% 21 253 65
50% 21 253 100
40% 21 253 126
30% 21 253 146
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 172 49
95% 19 221 64
90% 19 221 68
70% 19 221 81
50% 19 221 116
40% 19 221 144
30% 19 221 166
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 223 38
95% 20 223 63
90% 20 223 67
70% 20 223 80
50% 24 366 38
40% 24 366 52
30% 24 366 75
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 255 25
95% 21 256 39
90% 21 256 43
70% 21 256 55
50% 21 256 96
40% 23 363 55
30% 23 363 77
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 193 43
95% 21 254 47
90% 21 254 50
70% 21 254 62
50% 21 254 98
40% 21 254 123
30% 21 254 143
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 238 34
95% 21 238 55
90% 21 238 59
70% 21 238 71
50% 21 238 110
40% 21 238 133
30% 21 238 153
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 219 39
95% 19 219 66
90% 19 219 70
70% 19 219 83
50% 19 282 81
40% 19 282 101
30% 19 282 123
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 248 32
95% 21 256 40
90% 21 256 44
70% 21 256 56
50% 23 363 40
40% 23 364 54
30% 23 364 76
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 255 26
95% 21 255 43
90% 21 255 46
70% 21 255 58
50% 24 367 37
40% 24 367 51
30% 24 369 72
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 260 18
95% 28 266 34
90% 28 266 36
70% 28 266 47
50% 28 266 88
40% 28 266 112
30% 32 313 95
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 259 20
95% 22 260 37
90% 22 260 39
70% 22 260 51
50% 25 308 57
40% 25 309 74
30% 25 309 97
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 255 23
95% 22 255 41
90% 22 259 40
70% 22 259 52
50% 25 369 36
40% 26 371 49
30% 29 408 50
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 142 82
95% 21 255 45
90% 21 255 48
70% 21 255 60
50% 23 363 41
40% 23 363 56
30% 25 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.