Sequence Similarity Clusters for the Entities in PDB 4DV7

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 267 38
95 % 44 268 54
90 % 44 268 57
70 % 44 268 69
50 % 57 399 26
40 % 57 399 37
30 % 61 498 32
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 269 36
95 % 44 269 50
90 % 44 269 53
70 % 44 269 64
50 % 51 392 35
40 % 57 497 19
30 % 57 497 33
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 51 486
95 % 44 276 40
90 % 44 276 44
70 % 51 405 22
50 % 51 410 25
40 % 51 410 35
30 % 51 410 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 270 34
95 % 44 270 47
90 % 44 270 51
70 % 44 270 61
50 % 51 397 33
40 % 51 397 46
30 % 55 498 36
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 268 37
95 % 44 268 55
90 % 44 268 58
70 % 44 270 62
50 % 44 270 90
40 % 44 270 112
30 % 44 270 123
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 272 30
95 % 46 277 39
90 % 46 277 43
70 % 46 277 55
50 % 56 405 27
40 % 56 408 36
30 % 56 408 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 264 39
95 % 44 269 52
90 % 44 269 55
70 % 44 269 66
50 % 44 271 89
40 % 44 271 110
30 % 51 393 64
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 87 246
95 % 44 263 56
90 % 44 267 59
70 % 44 267 70
50 % 44 267 94
40 % 44 267 115
30 % 44 267 127
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 183 56
95 % 40 234 64
90 % 40 234 68
70 % 40 234 80
50 % 40 234 108
40 % 40 234 133
30 % 40 234 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 272 29
95 % 45 272 43
90 % 45 272 48
70 % 45 272 58
50 % 52 397 30
40 % 52 400 41
30 % 52 400 58
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 269 32
95 % 44 270 44
90 % 44 270 49
70 % 44 270 59
50 % 51 391 34
40 % 51 394 45
30 % 51 394 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 217 51
95 % 44 268 53
90 % 44 268 56
70 % 44 268 68
50 % 44 268 92
40 % 44 268 113
30 % 44 268 124
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 259 43
95 % 44 259 59
90 % 44 259 63
70 % 44 259 75
50 % 44 259 97
40 % 44 259 120
30 % 44 259 130
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 233 47
95 % 40 233 65
90 % 40 233 69
70 % 40 233 81
50 % 41 305 84
40 % 41 305 102
30 % 41 305 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 262 40
95 % 44 270 45
90 % 44 270 50
70 % 44 270 60
50 % 51 393 32
40 % 51 396 43
30 % 51 396 61
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 269 35
95 % 44 269 49
90 % 44 269 52
70 % 44 269 63
50 % 52 397 31
40 % 52 397 44
30 % 52 399 59
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 274 27
95 % 51 280 36
90 % 51 280 41
70 % 51 280 52
50 % 51 280 87
40 % 51 280 106
30 % 59 334 90
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 273 28
95 % 45 274 41
90 % 45 274 45
70 % 45 274 56
50 % 52 338 71
40 % 52 341 79
30 % 52 341 93
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 269 33
95 % 45 269 46
90 % 45 273 46
70 % 45 273 57
50 % 53 398 29
40 % 54 402 38
30 % 59 510 30
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 178 68
95 % 44 269 51
90 % 44 269 54
70 % 44 269 65
50 % 51 392 36
40 % 51 392 47
30 % 55 497 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.