Sequence Similarity Clusters for the Entities in PDB 4DV7

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 269 39
95 % 45 270 53
90 % 45 270 58
70 % 45 270 68
50 % 58 421 26
40 % 58 421 38
30 % 63 528 32
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 271 35
95 % 45 271 49
90 % 45 271 54
70 % 45 271 64
50 % 52 415 32
40 % 59 537 19
30 % 59 537 31
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 53 475
95 % 45 278 39
90 % 45 278 44
70 % 52 422 19
50 % 52 432 24
40 % 52 432 35
30 % 52 432 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 272 33
95 % 45 272 46
90 % 45 272 51
70 % 45 272 62
50 % 52 419 31
40 % 52 419 43
30 % 57 527 36
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 270 36
95 % 45 270 54
90 % 45 270 59
70 % 45 279 54
50 % 45 279 90
40 % 45 279 113
30 % 45 279 123
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 274 30
95 % 47 279 38
90 % 47 279 43
70 % 47 279 53
50 % 57 428 25
40 % 57 433 34
30 % 57 433 54
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 266 41
95 % 45 271 51
90 % 45 271 56
70 % 45 271 66
50 % 45 278 91
40 % 45 278 114
30 % 52 413 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 87 258
95 % 45 265 56
90 % 45 269 60
70 % 45 269 69
50 % 45 269 94
40 % 45 269 117
30 % 45 269 128
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 185 56
95 % 41 236 65
90 % 41 236 69
70 % 41 236 81
50 % 41 236 111
40 % 41 236 135
30 % 41 236 144
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 274 29
95 % 46 274 42
90 % 46 274 48
70 % 46 274 58
50 % 53 421 28
40 % 53 424 40
30 % 53 424 57
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 271 31
95 % 45 272 43
90 % 45 272 49
70 % 45 272 59
50 % 52 409 36
40 % 52 414 45
30 % 52 414 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 219 50
95 % 45 270 52
90 % 45 270 57
70 % 45 270 67
50 % 45 270 93
40 % 45 270 116
30 % 45 270 127
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 261 43
95 % 45 261 59
90 % 45 261 63
70 % 45 261 74
50 % 45 261 98
40 % 45 261 121
30 % 45 261 133
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 235 48
95 % 41 235 66
90 % 41 235 70
70 % 41 235 82
50 % 42 309 84
40 % 42 309 103
30 % 42 309 116
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 264 42
95 % 45 272 44
90 % 45 272 50
70 % 45 272 60
50 % 52 416 29
40 % 52 421 41
30 % 52 421 58
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 271 34
95 % 45 271 48
90 % 45 271 53
70 % 45 271 63
50 % 53 417 30
40 % 53 417 42
30 % 53 419 60
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 276 27
95 % 52 282 37
90 % 52 282 42
70 % 52 282 51
50 % 52 282 88
40 % 52 282 110
30 % 60 355 95
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 275 28
95 % 46 276 41
90 % 46 276 46
70 % 46 276 56
50 % 53 356 66
40 % 53 361 84
30 % 53 361 96
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 271 32
95 % 46 271 45
90 % 46 275 47
70 % 46 275 57
50 % 54 421 27
40 % 55 427 37
30 % 61 542 30
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 180 69
95 % 45 271 50
90 % 45 271 55
70 % 45 271 65
50 % 52 411 35
40 % 52 411 48
30 % 57 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.