Sequence Similarity Clusters for the Entities in PDB 4DV6

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 252 35
95 % 32 253 48
90 % 32 253 53
70 % 32 253 63
50 % 41 348 28
40 % 41 348 38
30 % 44 420 36
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 254 33
95 % 32 254 44
90 % 32 254 49
70 % 32 254 58
50 % 35 342 36
40 % 40 421 22
30 % 40 422 35
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 47 484
95 % 32 261 35
90 % 32 261 39
70 % 35 353 23
50 % 35 354 27
40 % 35 354 37
30 % 35 354 56
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 255 30
95 % 32 255 41
90 % 32 255 46
70 % 32 255 55
50 % 35 347 33
40 % 35 347 45
30 % 38 421 41
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 253 34
95 % 32 253 49
90 % 32 253 54
70 % 32 254 61
50 % 32 254 86
40 % 32 254 107
30 % 32 254 119
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 257 27
95 % 33 262 34
90 % 33 262 38
70 % 33 262 49
50 % 39 355 26
40 % 39 356 36
30 % 39 356 55
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 249 36
95 % 32 254 46
90 % 32 254 51
70 % 32 254 60
50 % 32 254 85
40 % 32 255 106
30 % 35 345 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 87 223
95 % 32 248 50
90 % 32 252 55
70 % 32 252 64
50 % 32 252 88
40 % 32 252 109
30 % 32 252 122
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 168 56
95 % 30 219 63
90 % 30 219 68
70 % 30 219 78
50 % 30 219 108
40 % 30 219 130
30 % 30 219 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 257 26
95 % 33 257 37
90 % 33 257 43
70 % 33 257 52
50 % 36 345 31
40 % 36 345 42
30 % 36 345 60
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 254 28
95 % 32 255 38
90 % 32 255 44
70 % 32 255 53
50 % 35 341 35
40 % 35 342 47
30 % 35 342 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 202 47
95 % 32 253 47
90 % 32 253 52
70 % 32 253 62
50 % 32 253 87
40 % 32 253 108
30 % 32 253 121
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 244 38
95 % 32 244 54
90 % 32 244 57
70 % 32 244 68
50 % 32 244 92
40 % 32 244 115
30 % 32 244 129
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 218 44
95 % 30 218 64
90 % 30 218 69
70 % 30 218 79
50 % 31 269 79
40 % 31 269 98
30 % 31 269 112
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 247 37
95 % 32 255 39
90 % 32 255 45
70 % 32 255 54
50 % 35 342 34
40 % 35 343 44
30 % 35 343 61
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 254 32
95 % 32 254 43
90 % 32 254 48
70 % 32 254 57
50 % 35 346 30
40 % 35 346 41
30 % 35 348 57
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 259 24
95 % 39 265 33
90 % 39 265 36
70 % 39 265 44
50 % 39 265 82
40 % 39 265 101
30 % 43 304 78
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 258 25
95 % 33 259 36
90 % 33 259 41
70 % 33 259 50
50 % 36 304 51
40 % 36 305 64
30 % 36 305 87
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 254 29
95 % 33 254 40
90 % 33 258 42
70 % 33 258 51
50 % 37 348 29
40 % 38 350 39
30 % 42 425 33
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 163 72
95 % 32 254 45
90 % 32 254 50
70 % 32 254 59
50 % 35 342 37
40 % 35 342 48
30 % 38 416 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.