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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G
Sequence Clustering and Redundancy Reduction Results
4DV6
Sequence Clusters for the Sequence Entities in PDB 4DV6
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 187 27
95% 15 188 47
90% 15 188 50
70% 15 188 60
50% 22 269 34
40% 22 269 46
30% 22 274 65
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 189 25
95% 15 189 43
90% 15 189 46
70% 15 189 56
50% 16 263 41
40% 21 316 35
30% 21 316 44
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 29 1056
95% 15 196 35
90% 15 196 37
70% 16 275 24
50% 16 275 33
40% 16 275 45
30% 16 275 68
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 190 22
95% 15 190 41
90% 15 190 44
70% 15 190 54
50% 16 268 38
40% 16 268 51
30% 19 317 50
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 188 26
95% 15 188 48
90% 15 188 51
70% 15 188 61
50% 15 188 94
40% 15 188 119
30% 15 188 142
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 192 20
95% 16 197 33
90% 16 197 35
70% 16 197 47
50% 20 276 32
40% 20 276 43
30% 20 276 67
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 184 28
95% 15 189 45
90% 15 189 48
70% 15 189 58
50% 15 189 92
40% 15 189 117
30% 16 266 76
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 79 221
95% 15 183 49
90% 15 187 52
70% 15 187 62
50% 15 187 95
40% 15 187 120
30% 15 187 143
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 119 48
95% 15 168 61
90% 15 168 64
70% 15 168 80
50% 15 168 117
40% 15 168 139
30% 15 168 161
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 170 37
95% 16 170 59
90% 16 170 63
70% 16 170 78
50% 17 266 37
40% 17 266 49
30% 17 266 72
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 189 23
95% 15 190 38
90% 15 190 42
70% 15 190 52
50% 15 190 91
40% 16 263 53
30% 16 263 75
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 140 42
95% 15 188 46
90% 15 188 49
70% 15 188 59
50% 15 188 93
40% 15 188 118
30% 15 188 141
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 179 34
95% 15 179 53
90% 15 179 55
70% 15 179 68
50% 15 179 105
40% 15 179 132
30% 15 179 151
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 166 38
95% 15 166 63
90% 15 166 66
70% 15 166 82
50% 15 206 75
40% 15 206 100
30% 15 206 120
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 182 29
95% 15 190 39
90% 15 190 43
70% 15 190 53
50% 16 263 39
40% 16 264 52
30% 16 264 74
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 189 24
95% 15 189 42
90% 15 189 45
70% 15 189 55
50% 16 267 36
40% 16 267 48
30% 16 269 71
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 194 18
95% 22 200 29
90% 22 200 30
70% 22 200 44
50% 22 200 86
40% 22 200 108
30% 25 236 94
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 193 19
95% 16 194 36
90% 16 194 38
70% 16 194 49
50% 18 234 56
40% 18 235 74
30% 18 235 96
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 189 21
95% 16 189 40
90% 16 193 39
70% 16 193 51
50% 18 269 35
40% 19 271 47
30% 23 321 43
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 102 76
95% 15 189 44
90% 15 189 47
70% 15 189 57
50% 16 263 40
40% 16 263 54
30% 19 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.