Sequence Similarity Clusters for the Entities in PDB 4DV5

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 267 37
95 % 99 268 50
90 % 99 268 53
70 % 99 268 64
50 % 128 385 26
40 % 128 385 37
30 % 141 476 29
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 269 35
95 % 99 269 46
90 % 99 269 49
70 % 99 269 58
50 % 122 379 35
40 % 137 470 19
30 % 137 471 32
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 51 434
95 % 99 276 35
90 % 99 276 39
70 % 122 390 21
50 % 122 391 25
40 % 122 391 36
30 % 122 391 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 270 33
95 % 99 270 43
90 % 99 270 47
70 % 99 270 56
50 % 125 384 31
40 % 125 384 43
30 % 138 477 35
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 268 36
95 % 99 268 51
90 % 99 268 54
70 % 99 269 61
50 % 99 269 87
40 % 99 269 107
30 % 99 269 117
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 272 28
95 % 103 277 34
90 % 103 277 38
70 % 103 277 49
50 % 129 392 23
40 % 129 393 35
30 % 129 393 53
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 264 38
95 % 99 269 48
90 % 99 269 51
70 % 99 269 60
50 % 99 269 86
40 % 99 270 106
30 % 125 382 62
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 87 232
95 % 99 263 52
90 % 99 267 55
70 % 99 267 65
50 % 99 267 90
40 % 99 267 109
30 % 99 267 119
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 183 52
95 % 89 234 62
90 % 89 234 66
70 % 89 234 77
50 % 89 234 103
40 % 89 234 129
30 % 89 234 139
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 272 27
95 % 100 272 39
90 % 100 272 44
70 % 100 272 53
50 % 123 382 30
40 % 123 382 41
30 % 123 382 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 269 31
95 % 99 270 40
90 % 99 270 45
70 % 99 270 54
50 % 122 378 34
40 % 122 379 44
30 % 122 379 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 217 48
95 % 99 268 49
90 % 99 268 52
70 % 99 268 63
50 % 99 268 89
40 % 99 268 108
30 % 99 268 118
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 259 41
95 % 99 259 54
90 % 99 259 58
70 % 99 259 68
50 % 99 259 93
40 % 99 259 115
30 % 99 259 128
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 233 44
95 % 88 233 63
90 % 88 233 67
70 % 88 233 78
50 % 92 293 78
40 % 92 293 96
30 % 92 293 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 262 39
95 % 99 270 41
90 % 99 270 46
70 % 99 270 55
50 % 122 379 32
40 % 122 380 42
30 % 122 380 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 269 34
95 % 99 269 45
90 % 99 269 48
70 % 99 269 57
50 % 123 383 29
40 % 123 383 40
30 % 123 385 58
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 274 24
95 % 107 280 32
90 % 107 280 37
70 % 107 280 48
50 % 107 280 83
40 % 107 280 102
30 % 128 332 78
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 273 26
95 % 100 274 36
90 % 100 274 40
70 % 100 274 50
50 % 123 332 59
40 % 123 333 72
30 % 123 333 88
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 269 32
95 % 100 269 42
90 % 100 273 41
70 % 100 273 51
50 % 125 385 28
40 % 126 387 38
30 % 140 483 28
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 178 65
95 % 99 269 47
90 % 99 269 50
70 % 99 269 59
50 % 122 379 36
40 % 122 379 45
30 % 135 473 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.