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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DV3
Sequence Clusters for the Sequence Entities in PDB 4DV3
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 218 36
95% 74 219 50
90% 74 219 54
70% 74 219 65
50% 94 304 31
40% 94 304 42
30% 107 357 42
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 220 34
95% 74 220 46
90% 74 220 50
70% 74 220 60
50% 88 298 42
40% 103 358 31
30% 103 359 41
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 36 710
95% 74 227 27
90% 74 227 32
70% 88 309 22
50% 88 310 30
40% 88 310 41
30% 88 310 57
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 221 32
95% 74 221 44
90% 74 221 48
70% 74 221 58
50% 90 303 39
40% 90 303 50
30% 103 358 46
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 219 35
95% 74 219 51
90% 74 219 55
70% 74 220 63
50% 74 220 92
40% 74 220 113
30% 74 220 126
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 223 28
95% 78 228 25
90% 78 228 29
70% 78 228 41
50% 95 311 29
40% 95 312 39
30% 95 312 55
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 215 37
95% 74 220 48
90% 74 220 52
70% 74 220 62
50% 74 220 91
40% 74 221 112
30% 90 301 69
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 80 223
95% 74 214 56
90% 74 218 57
70% 74 218 67
50% 74 218 94
40% 74 218 116
30% 74 218 128
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 145 55
95% 69 194 64
90% 69 194 66
70% 69 194 78
50% 69 194 110
40% 69 194 129
30% 69 194 148
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 223 27
95% 75 223 40
90% 75 223 45
70% 75 223 55
50% 89 301 36
40% 89 301 47
30% 89 301 66
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 220 30
95% 74 221 41
90% 74 221 46
70% 74 221 56
50% 88 297 41
40% 88 298 51
30% 88 298 68
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 170 49
95% 74 219 49
90% 74 219 53
70% 74 219 64
50% 74 219 93
40% 74 219 114
30% 74 219 127
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 210 39
95% 74 210 59
90% 74 210 62
70% 74 210 72
50% 74 210 98
40% 74 210 120
30% 74 210 133
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 193 45
95% 68 193 65
90% 68 193 67
70% 68 193 79
50% 71 234 78
40% 71 234 99
30% 71 234 118
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 213 38
95% 74 221 42
90% 74 221 47
70% 74 221 57
50% 88 298 40
40% 88 299 49
30% 88 299 67
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 220 33
95% 74 220 45
90% 74 220 49
70% 74 220 59
50% 89 302 35
40% 89 302 46
30% 89 304 64
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 225 24
95% 82 231 23
90% 82 231 28
70% 82 231 39
50% 82 231 82
40% 82 231 104
30% 95 270 77
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 224 26
95% 75 225 38
90% 75 225 42
70% 75 225 52
50% 89 268 49
40% 89 269 60
30% 89 269 80
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 220 31
95% 75 220 43
90% 75 224 43
70% 75 224 53
50% 91 304 33
40% 92 306 44
30% 106 362 40
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 130 75
95% 74 220 47
90% 74 220 51
70% 74 220 61
50% 88 298 43
40% 88 298 52
30% 101 353 47
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.