Sequence Similarity Clusters for the Entities in PDB 4DV3

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 252 35
95 % 97 253 47
90 % 97 253 52
70 % 97 253 62
50 % 118 348 28
40 % 118 348 38
30 % 131 418 37
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 254 33
95 % 97 254 43
90 % 97 254 48
70 % 97 254 57
50 % 112 342 36
40 % 127 419 22
30 % 127 420 35
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 460
95 % 97 261 35
90 % 97 261 39
70 % 112 353 23
50 % 112 354 27
40 % 112 354 37
30 % 112 354 56
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 255 30
95 % 97 255 41
90 % 97 255 46
70 % 97 255 55
50 % 114 347 33
40 % 114 347 45
30 % 127 419 42
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 253 34
95 % 97 253 48
90 % 97 253 53
70 % 97 254 60
50 % 97 254 86
40 % 97 254 106
30 % 97 254 118
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 257 27
95 % 101 262 33
90 % 101 262 37
70 % 101 262 48
50 % 119 355 26
40 % 119 356 36
30 % 119 356 55
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 249 36
95 % 97 254 45
90 % 97 254 50
70 % 97 254 59
50 % 97 254 85
40 % 97 255 105
30 % 114 345 62
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 87 221
95 % 97 248 50
90 % 97 252 54
70 % 97 252 63
50 % 97 252 88
40 % 97 252 108
30 % 97 252 120
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 168 55
95 % 87 219 62
90 % 87 219 66
70 % 87 219 77
50 % 87 219 107
40 % 87 219 128
30 % 87 219 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 257 26
95 % 98 257 37
90 % 98 257 43
70 % 98 257 52
50 % 113 345 31
40 % 113 345 42
30 % 113 345 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 254 28
95 % 97 255 38
90 % 97 255 44
70 % 97 255 53
50 % 112 341 35
40 % 112 342 46
30 % 112 342 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 202 47
95 % 97 253 46
90 % 97 253 51
70 % 97 253 61
50 % 97 253 87
40 % 97 253 107
30 % 97 253 119
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 244 38
95 % 97 244 54
90 % 97 244 57
70 % 97 244 67
50 % 97 244 91
40 % 97 244 113
30 % 97 244 126
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 218 43
95 % 86 218 63
90 % 86 218 67
70 % 86 218 78
50 % 90 269 77
40 % 90 269 97
30 % 90 269 112
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 247 37
95 % 97 255 39
90 % 97 255 45
70 % 97 255 54
50 % 112 342 34
40 % 112 343 44
30 % 112 343 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 254 32
95 % 97 254 42
90 % 97 254 47
70 % 97 254 56
50 % 113 346 30
40 % 113 346 41
30 % 113 348 57
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 259 24
95 % 105 265 21
90 % 105 265 24
70 % 105 265 32
50 % 105 265 79
40 % 105 265 100
30 % 118 304 78
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 258 25
95 % 98 259 36
90 % 98 259 41
70 % 98 259 50
50 % 112 304 51
40 % 112 305 63
30 % 112 305 86
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 254 29
95 % 98 254 40
90 % 98 258 42
70 % 98 258 51
50 % 115 348 29
40 % 116 350 39
30 % 130 423 33
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 163 72
95 % 97 254 44
90 % 97 254 49
70 % 97 254 58
50 % 112 342 37
40 % 112 342 47
30 % 125 414 44

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.