Sequence Similarity Clusters for the Entities in PDB 4DV3

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 237 25
95 % 85 238 38
90 % 85 238 43
70 % 85 238 53
50 % 106 330 30
40 % 106 330 40
30 % 119 396 41
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 239 23
95 % 85 239 34
90 % 85 239 39
70 % 85 239 48
50 % 100 324 38
40 % 115 397 27
30 % 115 398 39
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 44 507
95 % 85 246 22
90 % 85 246 27
70 % 100 335 23
50 % 100 336 29
40 % 100 336 39
30 % 100 336 56
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 240 20
95 % 85 240 32
90 % 85 240 37
70 % 85 240 46
50 % 102 329 35
40 % 102 329 46
30 % 115 397 46
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 238 24
95 % 85 238 39
90 % 85 238 44
70 % 85 239 51
50 % 85 239 82
40 % 85 239 108
30 % 85 239 124
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 242 16
95 % 89 247 21
90 % 89 247 26
70 % 89 247 37
50 % 107 337 27
40 % 107 338 38
30 % 107 338 54
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 234 26
95 % 85 239 36
90 % 85 239 41
70 % 85 239 50
50 % 85 239 81
40 % 85 240 106
30 % 102 327 65
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 84 225
95 % 85 233 40
90 % 85 237 45
70 % 85 237 54
50 % 85 237 87
40 % 85 237 113
30 % 85 237 128
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 156 56
95 % 76 205 63
90 % 76 205 66
70 % 76 205 75
50 % 76 205 109
40 % 76 205 129
30 % 76 205 145
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 242 15
95 % 86 242 26
90 % 86 242 31
70 % 86 242 42
50 % 101 327 34
40 % 101 327 44
30 % 101 327 60
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 239 17
95 % 85 240 27
90 % 85 240 33
70 % 85 240 43
50 % 100 323 37
40 % 100 324 47
30 % 100 324 63
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 188 48
95 % 85 238 37
90 % 85 238 42
70 % 85 238 52
50 % 85 238 83
40 % 85 238 110
30 % 85 238 126
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 229 39
95 % 85 229 54
90 % 85 229 58
70 % 85 229 69
50 % 85 229 97
40 % 85 229 118
30 % 85 229 133
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 204 43
95 % 75 204 64
90 % 75 204 67
70 % 75 204 76
50 % 79 252 68
40 % 79 252 93
30 % 79 252 110
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 232 27
95 % 85 240 28
90 % 85 240 34
70 % 85 240 44
50 % 100 324 36
40 % 100 325 45
30 % 100 325 62
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 239 22
95 % 85 239 33
90 % 85 239 38
70 % 85 239 47
50 % 101 328 33
40 % 101 328 43
30 % 101 330 59
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 244 13
95 % 93 250 20
90 % 93 250 25
70 % 93 250 35
50 % 93 250 70
40 % 93 250 94
30 % 106 289 80
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 243 14
95 % 86 244 25
90 % 86 244 29
70 % 86 244 40
50 % 100 289 50
40 % 100 290 62
30 % 100 290 83
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 239 19
95 % 86 239 31
90 % 86 243 30
70 % 86 243 41
50 % 103 330 31
40 % 104 332 41
30 % 118 401 37
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 149 70
95 % 85 239 35
90 % 85 239 40
70 % 85 239 49
50 % 100 324 39
40 % 100 324 49
30 % 113 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.