Sequence Similarity Clusters for the Entities in PDB 4DV3

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 290 34
95 % 110 291 49
90 % 110 291 54
70 % 110 291 65
50 % 138 455 25
40 % 138 455 40
30 % 152 572 34
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 292 32
95 % 110 292 45 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 110 292 50
70 % 110 292 60
50 % 132 449 33
40 % 148 584 19
30 % 148 584 33
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 71 325
95 % 110 299 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 110 299 41
70 % 132 453 17
50 % 132 466 24
40 % 132 466 38
30 % 132 466 57
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 293 30
95 % 110 293 43 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 110 293 47
70 % 110 293 58
50 % 134 453 32
40 % 134 453 46
30 % 148 573 37
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 291 33
95 % 110 291 50
90 % 110 291 55
70 % 110 304 49
50 % 110 304 89
40 % 110 304 110
30 % 110 304 122
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 295 27
95 % 114 300 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 114 300 40
70 % 114 300 50
50 % 139 461 26
40 % 139 466 37
30 % 139 466 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 287 35
95 % 110 292 47 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 110 292 52
70 % 110 292 62
50 % 110 302 90
40 % 110 308 107
30 % 134 451 64
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 91 276
95 % 110 285 51 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 110 289 56
70 % 110 289 66
50 % 110 289 94
40 % 110 289 117
30 % 110 289 127
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 90 195 59
95 % 97 246 65 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 97 246 68
70 % 97 246 84
50 % 97 246 113
40 % 97 246 138
30 % 97 246 143
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 111 295 26
95 % 111 295 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 111 295 44
70 % 111 295 54
50 % 133 455 28
40 % 133 458 42
30 % 133 458 58
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 292 28
95 % 110 293 40 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 110 293 45
70 % 110 293 55
50 % 132 441 35
40 % 132 447 47
30 % 132 447 63
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 101 238 47
95 % 110 291 48 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 110 291 53
70 % 110 291 64
50 % 110 291 93
40 % 110 291 116
30 % 110 291 126
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 282 41
95 % 110 282 55 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 110 282 61
70 % 110 282 71
50 % 110 282 98
40 % 110 282 121
30 % 110 282 129
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 96 245 46
95 % 96 245 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 96 245 69
70 % 96 245 85
50 % 100 320 86
40 % 100 320 104
30 % 100 320 116
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 285 38
95 % 110 293 41 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 110 293 46
70 % 110 293 57
50 % 132 449 29
40 % 132 455 43
30 % 132 455 59
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 292 31
95 % 110 292 44 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 110 292 49
70 % 110 292 59
50 % 133 450 31
40 % 133 450 45
30 % 133 452 61
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 112 297 24
95 % 118 303 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 118 303 39
70 % 118 303 48
50 % 118 303 88
40 % 118 303 109
30 % 138 386 88
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 111 296 25
95 % 111 297 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 111 297 42
70 % 111 297 51
50 % 132 388 60
40 % 132 394 71
30 % 132 394 87
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 111 292 29
95 % 111 292 42 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 111 296 43
70 % 111 296 52
50 % 135 454 27
40 % 136 461 39
30 % 151 589 32
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 198 63
95 % 110 292 46 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 110 292 51
70 % 110 292 61
50 % 132 443 34
40 % 132 444 48
30 % 146 573 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures