Sequence Similarity Clusters for the Entities in PDB 4DV2

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 267 37
95 % 114 268 50
90 % 114 268 53
70 % 114 268 64
50 % 145 385 26
40 % 145 385 37
30 % 161 476 29
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 269 35
95 % 114 269 46
90 % 114 269 49
70 % 114 269 58
50 % 139 379 35
40 % 157 470 19
30 % 157 471 32
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 51 434
95 % 114 276 35
90 % 114 276 39
70 % 139 390 21
50 % 139 391 25
40 % 139 391 36
30 % 139 391 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 270 33
95 % 114 270 43
90 % 114 270 47
70 % 114 270 56
50 % 142 384 31
40 % 142 384 43
30 % 158 477 35
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 268 36
95 % 114 268 51
90 % 114 268 54
70 % 114 269 61
50 % 114 269 87
40 % 114 269 107
30 % 114 269 117
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 272 28
95 % 118 277 34
90 % 118 277 38
70 % 118 277 49
50 % 146 392 23
40 % 146 393 35
30 % 146 393 53
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 264 38
95 % 114 269 48
90 % 114 269 51
70 % 114 269 60
50 % 114 269 86
40 % 114 270 106
30 % 142 382 62
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 87 232
95 % 114 263 52
90 % 114 267 55
70 % 114 267 65
50 % 114 267 90
40 % 114 267 109
30 % 114 267 119
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 183 52
95 % 103 234 62
90 % 103 234 66
70 % 103 234 77
50 % 103 234 103
40 % 103 234 129
30 % 103 234 139
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 272 27
95 % 115 272 39
90 % 115 272 44
70 % 115 272 53
50 % 140 382 30
40 % 140 382 41
30 % 140 382 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 269 31
95 % 114 270 40
90 % 114 270 45
70 % 114 270 54
50 % 139 378 34
40 % 139 379 44
30 % 139 379 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 217 48
95 % 114 268 49
90 % 114 268 52
70 % 114 268 63
50 % 114 268 89
40 % 114 268 108
30 % 114 268 118
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 259 41
95 % 114 259 54
90 % 114 259 58
70 % 114 259 68
50 % 114 259 93
40 % 114 259 115
30 % 114 259 128
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 233 44
95 % 102 233 63
90 % 102 233 67
70 % 102 233 78
50 % 106 293 78
40 % 106 293 96
30 % 106 293 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 262 39
95 % 114 270 41
90 % 114 270 46
70 % 114 270 55
50 % 139 379 32
40 % 139 380 42
30 % 139 380 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 269 34
95 % 114 269 45
90 % 114 269 48
70 % 114 269 57
50 % 140 383 29
40 % 140 383 40
30 % 140 385 58
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 274 24
95 % 122 280 32
90 % 122 280 37
70 % 122 280 48
50 % 122 280 83
40 % 122 280 102
30 % 145 332 78
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 273 26
95 % 115 274 36
90 % 115 274 40
70 % 115 274 50
50 % 140 332 59
40 % 140 333 72
30 % 140 333 88
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 269 32
95 % 115 269 42
90 % 115 273 41
70 % 115 273 51
50 % 142 385 28
40 % 143 387 38
30 % 161 483 28
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 178 65
95 % 114 269 47
90 % 114 269 50
70 % 114 269 59
50 % 139 379 36
40 % 139 379 45
30 % 155 473 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.