Sequence Similarity Clusters for the Entities in PDB 4DV2

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 267 38
95 % 114 268 54
90 % 114 268 57
70 % 114 268 69
50 % 145 399 26
40 % 145 399 37
30 % 161 498 32
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 269 36
95 % 114 269 50
90 % 114 269 53
70 % 114 269 64
50 % 139 392 35
40 % 157 497 19
30 % 157 497 33
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 51 486
95 % 114 276 40
90 % 114 276 44
70 % 139 405 22
50 % 139 410 25
40 % 139 410 35
30 % 139 410 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 270 34
95 % 114 270 47
90 % 114 270 51
70 % 114 270 61
50 % 142 397 33
40 % 142 397 46
30 % 158 498 36
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 268 37
95 % 114 268 55
90 % 114 268 58
70 % 114 270 62
50 % 114 270 90
40 % 114 270 112
30 % 114 270 123
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 272 30
95 % 118 277 39
90 % 118 277 43
70 % 118 277 55
50 % 146 405 27
40 % 146 408 36
30 % 146 408 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 264 39
95 % 114 269 52
90 % 114 269 55
70 % 114 269 66
50 % 114 271 89
40 % 114 271 110
30 % 142 393 64
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 87 246
95 % 114 263 56
90 % 114 267 59
70 % 114 267 70
50 % 114 267 94
40 % 114 267 115
30 % 114 267 127
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 183 56
95 % 103 234 64
90 % 103 234 68
70 % 103 234 80
50 % 103 234 108
40 % 103 234 133
30 % 103 234 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 272 29
95 % 115 272 43
90 % 115 272 48
70 % 115 272 58
50 % 140 397 30
40 % 140 400 41
30 % 140 400 58
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 269 32
95 % 114 270 44
90 % 114 270 49
70 % 114 270 59
50 % 139 391 34
40 % 139 394 45
30 % 139 394 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 217 51
95 % 114 268 53
90 % 114 268 56
70 % 114 268 68
50 % 114 268 92
40 % 114 268 113
30 % 114 268 124
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 259 43
95 % 114 259 59
90 % 114 259 63
70 % 114 259 75
50 % 114 259 97
40 % 114 259 120
30 % 114 259 130
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 233 47
95 % 102 233 65
90 % 102 233 69
70 % 102 233 81
50 % 106 305 84
40 % 106 305 102
30 % 106 305 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 262 40
95 % 114 270 45
90 % 114 270 50
70 % 114 270 60
50 % 139 393 32
40 % 139 396 43
30 % 139 396 61
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 269 35
95 % 114 269 49
90 % 114 269 52
70 % 114 269 63
50 % 140 397 31
40 % 140 397 44
30 % 140 399 59
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 274 27
95 % 122 280 36
90 % 122 280 41
70 % 122 280 52
50 % 122 280 87
40 % 122 280 106
30 % 145 334 90
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 273 28
95 % 115 274 41
90 % 115 274 45
70 % 115 274 56
50 % 140 338 71
40 % 140 341 79
30 % 140 341 93
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 269 33
95 % 115 269 46
90 % 115 273 46
70 % 115 273 57
50 % 142 398 29
40 % 143 402 38
30 % 161 510 30
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 178 68
95 % 114 269 51
90 % 114 269 54
70 % 114 269 65
50 % 139 392 36
40 % 139 392 47
30 % 155 497 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.