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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
Sequence Clustering and Redundancy Reduction Results
4DV2
Sequence Clusters for the Sequence Entities in PDB 4DV2
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 204 25
95% 79 205 45
90% 79 205 47
70% 79 205 57
50% 102 290 35
40% 102 290 45
30% 116 342 46
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 206 23
95% 79 206 41
90% 79 206 43
70% 79 206 52
50% 96 284 41
40% 112 343 34
30% 112 344 45
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 33 848
95% 79 213 32
90% 79 213 35
70% 96 295 24
50% 96 296 34
40% 96 296 44
30% 96 296 67
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 207 20
95% 79 207 39
90% 79 207 41
70% 79 207 50
50% 99 289 39
40% 99 289 49
30% 113 343 48
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 205 24
95% 79 205 46
90% 79 205 48
70% 79 206 55
50% 79 206 85
40% 79 206 110
30% 79 206 129
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 209 18
95% 83 214 30
90% 83 214 33
70% 83 214 43
50% 103 297 33
40% 103 298 43
30% 103 298 65
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 201 29
95% 79 206 43
90% 79 206 45
70% 79 206 54
50% 79 206 84
40% 79 207 109
30% 99 287 74
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 80 223
95% 79 200 47
90% 79 204 49
70% 79 204 58
50% 79 204 87
40% 79 204 112
30% 79 204 131
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 131 56
95% 74 180 55
90% 74 180 57
70% 74 180 72
50% 74 180 119
40% 74 180 143
30% 74 180 159
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 209 17
95% 80 209 34
90% 80 209 38
70% 80 209 47
50% 97 287 38
40% 97 287 48
30% 97 287 71
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 206 21
95% 79 207 36
90% 79 207 39
70% 79 207 48
50% 96 283 43
40% 96 284 51
30% 96 284 73
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 156 52
95% 79 205 44
90% 79 205 46
70% 79 205 56
50% 79 205 86
40% 79 205 111
30% 79 205 130
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 196 32
95% 79 196 51
90% 79 196 53
70% 79 196 64
50% 79 196 97
40% 79 196 120
30% 79 196 143
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 179 36
95% 73 179 56
90% 73 179 59
70% 73 179 73
50% 76 220 77
40% 76 220 101
30% 76 220 120
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 199 30
95% 79 207 37
90% 79 207 40
70% 79 207 49
50% 96 284 40
40% 96 285 50
30% 96 285 72
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 206 22
95% 79 206 40
90% 79 206 42
70% 79 206 51
50% 97 288 37
40% 97 288 47
30% 97 290 69
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 211 15
95% 87 217 28
90% 87 217 31
70% 87 217 41
50% 87 217 78
40% 87 217 102
30% 103 256 85
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 210 16
95% 80 211 33
90% 80 211 36
70% 80 211 45
50% 98 254 52
40% 98 255 67
30% 98 255 88
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 206 19
95% 80 206 38
90% 80 210 37
70% 80 210 46
50% 99 290 36
40% 100 292 46
30% 115 347 44
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 116 81
95% 79 206 42
90% 79 206 44
70% 79 206 53
50% 96 284 42
40% 96 284 52
30% 110 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.