Sequence Similarity Clusters for the Entities in PDB 4DV2

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 252 35
95 % 113 253 48
90 % 113 253 53
70 % 113 253 63
50 % 137 348 28
40 % 137 348 38
30 % 152 420 36
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 254 33
95 % 113 254 44
90 % 113 254 49
70 % 113 254 58
50 % 131 342 36
40 % 148 421 22
30 % 148 422 35
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 47 484
95 % 113 261 35
90 % 113 261 39
70 % 131 353 23
50 % 131 354 27
40 % 131 354 37
30 % 131 354 56
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 255 30
95 % 113 255 41
90 % 113 255 46
70 % 113 255 55
50 % 134 347 33
40 % 134 347 45
30 % 149 421 41
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 253 34
95 % 113 253 49
90 % 113 253 54
70 % 113 254 61
50 % 113 254 86
40 % 113 254 107
30 % 113 254 119
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 257 27
95 % 117 262 34
90 % 117 262 38
70 % 117 262 49
50 % 138 355 26
40 % 138 356 36
30 % 138 356 55
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 249 36
95 % 113 254 46
90 % 113 254 51
70 % 113 254 60
50 % 113 254 85
40 % 113 255 106
30 % 134 345 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 87 223
95 % 113 248 50
90 % 113 252 55
70 % 113 252 64
50 % 113 252 88
40 % 113 252 109
30 % 113 252 122
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 168 56
95 % 102 219 63
90 % 102 219 68
70 % 102 219 78
50 % 102 219 108
40 % 102 219 130
30 % 102 219 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 257 26
95 % 114 257 37
90 % 114 257 43
70 % 114 257 52
50 % 132 345 31
40 % 132 345 42
30 % 132 345 60
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 254 28
95 % 113 255 38
90 % 113 255 44
70 % 113 255 53
50 % 131 341 35
40 % 131 342 47
30 % 131 342 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 202 47
95 % 113 253 47
90 % 113 253 52
70 % 113 253 62
50 % 113 253 87
40 % 113 253 108
30 % 113 253 121
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 244 38
95 % 113 244 54
90 % 113 244 57
70 % 113 244 68
50 % 113 244 92
40 % 113 244 115
30 % 113 244 129
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 218 44
95 % 101 218 64
90 % 101 218 69
70 % 101 218 79
50 % 105 269 79
40 % 105 269 98
30 % 105 269 112
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 112 247 37
95 % 113 255 39
90 % 113 255 45
70 % 113 255 54
50 % 131 342 34
40 % 131 343 44
30 % 131 343 61
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 254 32
95 % 113 254 43
90 % 113 254 48
70 % 113 254 57
50 % 132 346 30
40 % 132 346 41
30 % 132 348 57
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 259 24
95 % 121 265 33
90 % 121 265 36
70 % 121 265 44
50 % 121 265 82
40 % 121 265 101
30 % 137 304 78
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 258 25
95 % 114 259 36
90 % 114 259 41
70 % 114 259 50
50 % 132 304 51
40 % 132 305 64
30 % 132 305 87
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 254 29
95 % 114 254 40
90 % 114 258 42
70 % 114 258 51
50 % 134 348 29
40 % 135 350 39
30 % 151 425 33
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 163 72
95 % 113 254 45
90 % 113 254 50
70 % 113 254 59
50 % 131 342 37
40 % 131 342 48
30 % 146 416 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.