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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DV1
Sequence Clusters for the Sequence Entities in PDB 4DV1
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 193 28
95% 77 194 45
90% 77 194 47
70% 77 194 58
50% 99 275 34
40% 99 275 45
30% 99 280 65
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 195 26
95% 77 195 41
90% 77 195 43
70% 77 195 54
50% 93 269 41
40% 109 322 35
30% 109 322 44
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 29 1063
95% 77 202 32
90% 77 202 33
70% 93 281 23
50% 93 281 33
40% 93 281 44
30% 93 281 68
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 196 23
95% 77 196 39
90% 77 196 41
70% 77 196 52
50% 96 274 38
40% 96 274 50
30% 110 323 47
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 194 27
95% 77 194 46
90% 77 194 48
70% 77 194 59
50% 77 194 92
40% 77 194 115
30% 77 194 137
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 198 21
95% 81 203 30
90% 81 203 31
70% 81 203 43
50% 100 282 32
40% 100 282 42
30% 100 282 67
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 190 29
95% 77 195 43
90% 77 195 45
70% 77 195 56
50% 77 195 89
40% 77 195 113
30% 96 272 76
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 79 223
95% 77 189 48
90% 77 193 50
70% 77 193 61
50% 77 193 95
40% 77 193 120
30% 77 193 139
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 123 47
95% 72 172 58
90% 72 172 62
70% 72 172 76
50% 72 172 111
40% 72 172 137
30% 72 172 156
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 174 36
95% 72 174 57
90% 72 174 61
70% 72 174 75
50% 94 272 37
40% 94 272 49
30% 94 272 72
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 195 24
95% 77 196 36
90% 77 196 39
70% 77 196 50
50% 77 196 87
40% 93 269 52
30% 93 269 75
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 146 42
95% 77 194 44
90% 77 194 46
70% 77 194 57
50% 77 194 91
40% 77 194 114
30% 77 194 136
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 185 32
95% 77 185 51
90% 77 185 54
70% 77 185 65
50% 77 185 101
40% 77 185 127
30% 77 185 147
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 171 37
95% 71 171 59
90% 71 171 63
70% 71 171 77
50% 74 210 73
40% 74 210 97
30% 74 210 120
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 188 30
95% 77 196 37
90% 77 196 40
70% 77 196 51
50% 93 269 39
40% 93 270 51
30% 93 270 73
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 195 25
95% 77 195 40
90% 77 195 42
70% 77 195 53
50% 94 273 36
40% 94 273 48
30% 94 275 70
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 200 17
95% 85 206 29
90% 85 206 30
70% 85 206 40
50% 85 206 80
40% 85 206 105
30% 100 243 90
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 199 20
95% 78 200 33
90% 78 200 34
70% 78 200 47
50% 95 241 54
40% 95 242 70
30% 95 242 94
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 195 22
95% 78 195 38
90% 78 199 35
70% 78 199 48
50% 96 275 35
40% 97 277 46
30% 112 327 43
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 106 73
95% 77 195 42
90% 77 195 44
70% 77 195 55
50% 93 269 40
40% 93 269 53
30% 107 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.