Sequence Similarity Clusters for the Entities in PDB 4DV1

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 253 36
95 % 114 254 49
90 % 114 254 54
70 % 114 254 64
50 % 145 361 28
40 % 145 361 38
30 % 161 435 36
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 255 34
95 % 114 255 45
90 % 114 255 50
70 % 114 255 59
50 % 139 355 35
40 % 157 437 20
30 % 157 438 34
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 47 508
95 % 114 262 36
90 % 114 262 41
70 % 139 366 21
50 % 139 367 27
40 % 139 367 37
30 % 139 367 57
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 256 32
95 % 114 256 43
90 % 114 256 48
70 % 114 256 57
50 % 142 360 32
40 % 142 360 44
30 % 158 436 39
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 254 35
95 % 114 254 50
90 % 114 254 55
70 % 114 255 62
50 % 114 255 87
40 % 114 255 108
30 % 114 255 120
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 258 29
95 % 118 263 35
90 % 118 263 40
70 % 118 263 50
50 % 146 368 26
40 % 146 369 36
30 % 146 369 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 250 37
95 % 114 255 47
90 % 114 255 52
70 % 114 255 61
50 % 114 255 86
40 % 114 256 107
30 % 142 358 62
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 87 224
95 % 114 249 52
90 % 114 253 56
70 % 114 253 65
50 % 114 253 89
40 % 114 253 111
30 % 114 253 124
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 169 57
95 % 103 220 64
90 % 103 220 69
70 % 103 220 79
50 % 103 220 111
40 % 103 220 132
30 % 103 220 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 258 28
95 % 115 258 38
90 % 115 258 44
70 % 115 258 53
50 % 140 358 31
40 % 140 358 41
30 % 140 358 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 255 30
95 % 114 256 40
90 % 114 256 46
70 % 114 256 55
50 % 139 354 34
40 % 139 355 45
30 % 139 355 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 203 48
95 % 114 254 48
90 % 114 254 53
70 % 114 254 63
50 % 114 254 88
40 % 114 254 109
30 % 114 254 121
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 245 39
95 % 114 245 55
90 % 114 245 60
70 % 114 245 70
50 % 114 245 94
40 % 114 245 118
30 % 114 245 131
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 219 45
95 % 102 219 65
90 % 102 219 70
70 % 102 219 80
50 % 106 275 80
40 % 106 275 100
30 % 106 275 112
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 248 38
95 % 114 256 41
90 % 114 256 47
70 % 114 256 56
50 % 139 355 33
40 % 139 356 43
30 % 139 356 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 255 33
95 % 114 255 44
90 % 114 255 49
70 % 114 255 58
50 % 140 359 30
40 % 140 359 40
30 % 140 361 58
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 260 25
95 % 122 266 34
90 % 122 266 37
70 % 122 266 46
50 % 122 266 84
40 % 122 266 103
30 % 145 312 79
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 259 27
95 % 115 260 37
90 % 115 260 42
70 % 115 260 51
50 % 140 312 54
40 % 140 313 68
30 % 140 313 88
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 255 31
95 % 115 255 42
90 % 115 259 43
70 % 115 259 52
50 % 142 361 29
40 % 143 363 39
30 % 161 442 33
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 164 73
95 % 114 255 46
90 % 114 255 51
70 % 114 255 60
50 % 139 355 36
40 % 139 355 46
30 % 155 432 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.