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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DV1
Sequence Clusters for the Sequence Entities in PDB 4DV1
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 197 29
95% 79 198 45
90% 79 198 47
70% 79 198 59
50% 102 282 35
40% 102 282 45
30% 116 333 45
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 199 25
95% 79 199 40
90% 79 199 42
70% 79 199 54
50% 96 276 42
40% 112 332 35
30% 112 332 46
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 29 1086
95% 79 206 31
90% 79 206 33
70% 96 288 24
50% 96 288 34
40% 96 288 44
30% 96 288 69
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 200 22
95% 79 200 38
90% 79 200 40
70% 79 200 51
50% 99 281 39
40% 99 281 50
30% 113 333 49
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 198 26
95% 79 198 46
90% 79 198 48
70% 79 198 60
50% 79 198 92
40% 79 198 114
30% 79 198 137
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 202 20
95% 83 207 30
90% 83 207 32
70% 83 207 43
50% 103 289 33
40% 103 289 43
30% 103 289 67
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 194 30
95% 79 199 42
90% 79 199 44
70% 79 199 56
50% 79 199 89
40% 79 199 112
30% 99 279 76
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 80 222
95% 79 193 50
90% 79 197 49
70% 79 197 61
50% 79 197 93
40% 79 197 116
30% 79 197 138
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 125 59
95% 74 174 71
90% 74 174 75
70% 74 174 88
50% 74 174 128
40% 74 174 146
30% 74 174 164
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 202 19
95% 80 202 33
90% 80 202 36
70% 80 202 47
50% 97 279 38
40% 97 279 49
30% 97 279 73
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 199 23
95% 79 200 35
90% 79 200 38
70% 79 200 48
50% 79 200 88
40% 96 276 53
30% 96 276 75
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 149 54
95% 79 198 44
90% 79 198 46
70% 79 198 58
50% 79 198 91
40% 79 198 113
30% 79 198 136
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 189 32
95% 79 189 52
90% 79 189 55
70% 79 189 67
50% 79 189 111
40% 79 189 134
30% 79 189 153
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 173 48
95% 73 173 72
90% 73 173 76
70% 73 173 90
50% 76 214 76
40% 76 214 102
30% 76 214 122
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 192 31
95% 79 200 36
90% 79 200 39
70% 79 200 49
50% 96 276 40
40% 96 277 51
30% 96 277 74
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 199 24
95% 79 199 39
90% 79 199 41
70% 79 199 52
50% 97 280 37
40% 97 280 48
30% 97 282 72
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 204 17
95% 87 210 29
90% 87 210 31
70% 87 210 42
50% 87 210 82
40% 87 210 107
30% 103 248 87
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 203 18
95% 80 204 32
90% 80 204 34
70% 80 204 44
50% 98 246 53
40% 98 247 70
30% 98 247 94
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 199 21
95% 80 199 37
90% 80 203 35
70% 80 203 45
50% 99 282 36
40% 100 284 46
30% 115 337 44
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 109 86
95% 79 199 41
90% 79 199 43
70% 79 199 55
50% 96 276 41
40% 96 276 54
30% 110 328 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.