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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DV1
Sequence Clusters for the Sequence Entities in PDB 4DV1
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 252 29
95% 85 254 48
90% 85 254 51
70% 85 254 63
50% 125 369 34
40% 125 369 48
30% 125 374 67
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 255 27
95% 85 255 44
90% 85 255 47
70% 85 255 59
50% 119 363 42
40% 123 403 39
30% 123 403 53
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 29 959
95% 85 262 36
90% 85 262 38
70% 119 375 24
50% 119 375 33
40% 119 375 47
30% 119 375 71
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 256 24
95% 85 256 42
90% 85 256 45
70% 85 256 57
50% 119 365 39
40% 119 365 53
30% 121 401 57
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 254 28
95% 85 254 49
90% 85 254 52
70% 85 254 64
50% 85 254 99
40% 85 254 124
30% 85 254 144
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 258 21
95% 89 263 35
90% 89 263 37
70% 89 263 48
50% 126 376 32
40% 126 376 45
30% 126 376 69
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 250 31
95% 85 255 46
90% 85 255 49
70% 85 255 61
50% 85 255 97
40% 85 255 122
30% 119 363 78
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 92 219
95% 85 249 51
90% 85 253 53
70% 85 253 65
50% 85 253 100
40% 85 253 126
30% 85 253 146
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 172 49
95% 80 221 64
90% 80 221 68
70% 80 221 81
50% 80 221 116
40% 80 221 144
30% 80 221 166
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 223 38
95% 80 223 63
90% 80 223 67
70% 80 223 80
50% 120 366 38
40% 120 366 52
30% 120 366 75
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 255 25
95% 85 256 39
90% 85 256 43
70% 85 256 55
50% 85 256 96
40% 119 363 55
30% 119 363 77
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 193 43
95% 85 254 47
90% 85 254 50
70% 85 254 62
50% 85 254 98
40% 85 254 123
30% 85 254 143
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 238 34
95% 85 238 55
90% 85 238 59
70% 85 238 71
50% 85 238 110
40% 85 238 133
30% 85 238 153
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 219 39
95% 79 219 66
90% 79 219 70
70% 79 219 83
50% 91 282 81
40% 91 282 101
30% 91 282 123
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 248 32
95% 85 256 40
90% 85 256 44
70% 85 256 56
50% 119 363 40
40% 119 364 54
30% 119 364 76
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 255 26
95% 85 255 43
90% 85 255 46
70% 85 255 58
50% 120 367 37
40% 120 367 51
30% 120 369 72
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 260 18
95% 93 266 34
90% 93 266 36
70% 93 266 47
50% 93 266 88
40% 93 266 112
30% 117 313 95
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 259 20
95% 86 260 37
90% 86 260 39
70% 86 260 51
50% 109 308 57
40% 109 309 74
30% 109 309 97
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 255 23
95% 86 255 41
90% 86 259 40
70% 86 259 52
50% 122 369 36
40% 123 371 49
30% 126 408 50
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 142 82
95% 85 255 45
90% 85 255 48
70% 85 255 60
50% 119 363 41
40% 119 363 56
30% 121 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.