Sequence Similarity Clusters for the Entities in PDB 4DV1

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 269 39
95 % 117 270 53
90 % 117 270 58
70 % 117 270 68
50 % 148 421 26
40 % 148 421 38
30 % 165 528 32
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 271 35
95 % 117 271 49
90 % 117 271 54
70 % 117 271 64
50 % 142 415 32
40 % 161 537 19
30 % 161 537 31
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 53 475
95 % 117 278 39
90 % 117 278 44
70 % 142 422 19
50 % 142 432 24
40 % 142 432 35
30 % 142 432 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 272 33
95 % 117 272 46
90 % 117 272 51
70 % 117 272 62
50 % 145 419 31
40 % 145 419 43
30 % 162 527 36
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 270 36
95 % 117 270 54
90 % 117 270 59
70 % 117 279 54
50 % 117 279 90
40 % 117 279 113
30 % 117 279 123
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 274 30
95 % 121 279 38
90 % 121 279 43
70 % 121 279 53
50 % 149 428 25
40 % 149 433 34
30 % 149 433 54
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 266 41
95 % 117 271 51
90 % 117 271 56
70 % 117 271 66
50 % 117 278 91
40 % 117 278 114
30 % 145 413 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 87 258
95 % 117 265 56
90 % 117 269 60
70 % 117 269 69
50 % 117 269 94
40 % 117 269 117
30 % 117 269 128
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 185 56
95 % 106 236 65
90 % 106 236 69
70 % 106 236 81
50 % 106 236 111
40 % 106 236 135
30 % 106 236 144
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 274 29
95 % 118 274 42
90 % 118 274 48
70 % 118 274 58
50 % 143 421 28
40 % 143 424 40
30 % 143 424 57
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 271 31
95 % 117 272 43
90 % 117 272 49
70 % 117 272 59
50 % 142 409 36
40 % 142 414 45
30 % 142 414 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 219 50
95 % 117 270 52
90 % 117 270 57
70 % 117 270 67
50 % 117 270 93
40 % 117 270 116
30 % 117 270 127
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 261 43
95 % 117 261 59
90 % 117 261 63
70 % 117 261 74
50 % 117 261 98
40 % 117 261 121
30 % 117 261 133
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 235 48
95 % 105 235 66
90 % 105 235 70
70 % 105 235 82
50 % 109 309 84
40 % 109 309 103
30 % 109 309 116
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 264 42
95 % 117 272 44
90 % 117 272 50
70 % 117 272 60
50 % 142 416 29
40 % 142 421 41
30 % 142 421 58
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 271 34
95 % 117 271 48
90 % 117 271 53
70 % 117 271 63
50 % 143 417 30
40 % 143 417 42
30 % 143 419 60
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 276 27
95 % 125 282 37
90 % 125 282 42
70 % 125 282 51
50 % 125 282 88
40 % 125 282 110
30 % 148 355 95
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 275 28
95 % 118 276 41
90 % 118 276 46
70 % 118 276 56
50 % 143 356 66
40 % 143 361 84
30 % 143 361 96
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 271 32
95 % 118 271 45
90 % 118 275 47
70 % 118 275 57
50 % 145 421 27
40 % 146 427 37
30 % 165 542 30
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 180 69
95 % 117 271 50
90 % 117 271 55
70 % 117 271 65
50 % 142 411 35
40 % 142 411 48
30 % 159 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.