Sequence Similarity Clusters for the Entities in PDB 4DV1

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 267 40
95 % 115 268 54
90 % 115 268 58
70 % 115 268 69
50 % 146 402 26
40 % 146 402 37
30 % 162 502 32
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 269 37
95 % 115 269 50
90 % 115 269 54
70 % 115 269 64
50 % 140 395 34
40 % 158 501 19
30 % 158 501 33
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 51 490
95 % 115 276 40
90 % 115 276 44
70 % 140 406 22
50 % 140 412 25
40 % 140 412 35
30 % 140 412 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 270 35
95 % 115 270 47
90 % 115 270 52
70 % 115 270 62
50 % 143 400 33
40 % 143 400 45
30 % 159 502 36
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 268 38
95 % 115 268 55
90 % 115 268 59
70 % 115 271 61
50 % 115 271 90
40 % 115 271 111
30 % 115 271 124
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 272 30
95 % 119 277 39
90 % 119 277 43
70 % 119 277 55
50 % 147 408 27
40 % 147 411 36
30 % 147 411 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 264 41
95 % 115 269 52
90 % 115 269 56
70 % 115 269 66
50 % 115 272 89
40 % 115 272 110
30 % 143 396 64
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 87 247
95 % 115 263 57
90 % 115 267 60
70 % 115 267 70
50 % 115 267 94
40 % 115 267 115
30 % 115 267 127
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 183 56
95 % 104 234 65
90 % 104 234 70
70 % 104 234 81
50 % 104 234 108
40 % 104 234 133
30 % 104 234 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 272 29
95 % 116 272 43
90 % 116 272 48
70 % 116 272 58
50 % 141 400 30
40 % 141 403 41
30 % 141 403 58
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 269 33
95 % 115 270 44
90 % 115 270 50
70 % 115 270 59
50 % 140 392 37
40 % 140 395 46
30 % 140 395 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 217 51
95 % 115 268 53
90 % 115 268 57
70 % 115 268 68
50 % 115 268 93
40 % 115 268 114
30 % 115 268 126
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 259 43
95 % 115 259 59
90 % 115 259 63
70 % 115 259 75
50 % 115 259 98
40 % 115 259 120
30 % 115 259 131
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 233 48
95 % 103 233 66
90 % 103 233 71
70 % 103 233 82
50 % 107 306 83
40 % 107 306 102
30 % 107 306 114
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 262 42
95 % 115 270 45
90 % 115 270 51
70 % 115 270 60
50 % 140 396 32
40 % 140 399 43
30 % 140 399 61
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 269 36
95 % 115 269 49
90 % 115 269 53
70 % 115 269 63
50 % 141 400 31
40 % 141 400 44
30 % 141 402 59
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 274 27
95 % 123 280 37
90 % 123 280 41
70 % 123 280 52
50 % 123 280 87
40 % 123 280 106
30 % 146 336 93
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 273 28
95 % 116 274 41
90 % 116 274 45
70 % 116 274 56
50 % 141 339 71
40 % 141 342 84
30 % 141 342 97
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 269 34
95 % 116 269 46
90 % 116 273 46
70 % 116 273 57
50 % 143 401 28
40 % 144 405 38
30 % 162 514 30
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 178 68
95 % 115 269 51
90 % 115 269 55
70 % 115 269 65
50 % 140 395 35
40 % 140 395 47
30 % 156 501 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.