Sequence Similarity Clusters for the Entities in PDB 4DV1

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 245 34
95 % 110 246 47
90 % 110 246 52
70 % 110 246 63
50 % 134 340 29
40 % 134 340 39
30 % 148 406 41
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 247 32
95 % 110 247 43
90 % 110 247 48
70 % 110 247 57
50 % 128 334 37
40 % 144 407 27
30 % 144 408 40
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 46 468
95 % 110 254 35
90 % 110 254 40
70 % 128 345 23
50 % 128 346 28
40 % 128 346 38
30 % 128 346 57
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 248 30
95 % 110 248 41
90 % 110 248 46
70 % 110 248 55
50 % 131 339 34
40 % 131 339 46
30 % 145 407 44
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 246 33
95 % 110 246 48
90 % 110 246 53
70 % 110 247 60
50 % 110 247 85
40 % 110 247 107
30 % 110 247 119
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 250 27
95 % 114 255 33
90 % 114 255 38
70 % 114 255 48
50 % 135 347 27
40 % 135 348 37
30 % 135 348 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 242 35
95 % 110 247 45
90 % 110 247 50
70 % 110 247 59
50 % 110 247 84
40 % 110 248 105
30 % 131 337 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 84 229
95 % 110 241 49
90 % 110 245 54
70 % 110 245 64
50 % 110 245 87
40 % 110 245 109
30 % 110 245 121
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 163 56
95 % 99 212 63
90 % 99 212 66
70 % 99 212 77
50 % 99 212 108
40 % 99 212 129
30 % 99 212 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 250 26
95 % 111 250 37
90 % 111 250 43
70 % 111 250 52
50 % 129 337 33
40 % 129 337 44
30 % 129 337 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 247 28
95 % 110 248 38
90 % 110 248 44
70 % 110 248 53
50 % 128 333 36
40 % 128 334 47
30 % 128 334 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 196 46
95 % 110 246 46
90 % 110 246 51
70 % 110 246 62
50 % 110 246 86
40 % 110 246 108
30 % 110 246 120
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 237 39
95 % 110 237 55
90 % 110 237 59
70 % 110 237 69
50 % 110 237 93
40 % 110 237 115
30 % 110 237 130
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 211 43
95 % 98 211 64
90 % 98 211 67
70 % 98 211 78
50 % 102 261 80
40 % 102 261 98
30 % 102 261 116
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 240 36
95 % 110 248 39
90 % 110 248 45
70 % 110 248 54
50 % 128 334 35
40 % 128 335 45
30 % 128 335 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 247 31
95 % 110 247 42
90 % 110 247 47
70 % 110 247 56
50 % 129 338 32
40 % 129 338 43
30 % 129 340 58
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 112 252 24
95 % 118 258 32
90 % 118 258 36
70 % 118 258 47
50 % 118 258 82
40 % 118 258 101
30 % 134 297 79
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 251 25
95 % 111 252 36
90 % 111 252 41
70 % 111 252 50
50 % 129 297 49
40 % 129 298 62
30 % 129 298 86
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 247 29
95 % 111 247 40
90 % 111 251 42
70 % 111 251 51
50 % 131 340 31
40 % 132 342 40
30 % 147 411 39
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 157 70
95 % 110 247 44
90 % 110 247 49
70 % 110 247 58
50 % 128 334 38
40 % 128 334 48
30 % 142 402 45

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.