Sequence Similarity Clusters for the Entities in PDB 4DV1

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 254 36
95 % 114 255 49
90 % 114 255 54
70 % 114 255 64
50 % 145 366 28
40 % 145 366 38
30 % 161 440 36
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 256 34
95 % 114 256 45
90 % 114 256 50
70 % 114 256 59
50 % 139 360 35
40 % 157 442 20
30 % 157 443 33
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 47 513
95 % 114 263 36
90 % 114 263 41
70 % 139 371 21
50 % 139 372 27
40 % 139 372 37
30 % 139 372 57
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 257 32
95 % 114 257 43
90 % 114 257 48
70 % 114 257 57
50 % 142 365 32
40 % 142 365 44
30 % 158 441 39
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 255 35
95 % 114 255 50
90 % 114 255 55
70 % 114 256 62
50 % 114 256 88
40 % 114 256 108
30 % 114 256 120
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 259 29
95 % 118 264 35
90 % 118 264 40
70 % 118 264 50
50 % 146 373 26
40 % 146 374 36
30 % 146 374 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 251 37
95 % 114 256 47
90 % 114 256 52
70 % 114 256 61
50 % 114 256 87
40 % 114 257 107
30 % 142 363 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 87 225
95 % 114 250 51
90 % 114 254 56
70 % 114 254 66
50 % 114 254 90
40 % 114 254 112
30 % 114 254 124
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 170 57
95 % 103 221 64
90 % 103 221 69
70 % 103 221 79
50 % 103 221 111
40 % 103 221 132
30 % 103 221 143
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 259 27
95 % 115 259 38
90 % 115 259 44
70 % 115 259 53
50 % 140 363 31
40 % 140 363 42
30 % 140 363 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 256 30
95 % 114 257 39
90 % 114 257 45
70 % 114 257 54
50 % 139 359 34
40 % 139 360 45
30 % 139 360 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 204 48
95 % 114 255 48
90 % 114 255 53
70 % 114 255 63
50 % 114 255 89
40 % 114 255 111
30 % 114 255 123
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 246 39
95 % 114 246 54
90 % 114 246 59
70 % 114 246 69
50 % 114 246 96
40 % 114 246 119
30 % 114 246 133
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 220 45
95 % 102 220 65
90 % 102 220 70
70 % 102 220 80
50 % 106 280 77
40 % 106 280 99
30 % 106 280 112
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 249 38
95 % 114 257 40
90 % 114 257 46
70 % 114 257 55
50 % 139 360 33
40 % 139 361 43
30 % 139 361 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 256 33
95 % 114 256 44
90 % 114 256 49
70 % 114 256 58
50 % 140 364 30
40 % 140 364 41
30 % 140 366 58
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 261 25
95 % 122 267 34
90 % 122 267 37
70 % 122 267 46
50 % 122 267 84
40 % 122 267 103
30 % 145 313 82
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 260 26
95 % 115 261 37
90 % 115 261 42
70 % 115 261 51
50 % 140 313 56
40 % 140 314 74
30 % 140 314 95
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 256 31
95 % 115 256 42
90 % 115 260 43
70 % 115 260 52
50 % 142 366 29
40 % 143 368 39
30 % 161 447 31
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 165 73
95 % 114 256 46
90 % 114 256 51
70 % 114 256 60
50 % 139 360 36
40 % 139 360 46
30 % 155 437 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.