Sequence Similarity Clusters for the Entities in PDB 4DV0

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 237 25
95 % 95 238 38
90 % 95 238 43
70 % 95 238 53
50 % 118 330 30
40 % 118 330 40
30 % 131 396 41
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 239 23
95 % 95 239 34
90 % 95 239 39
70 % 95 239 48
50 % 112 324 38
40 % 127 397 27
30 % 127 398 39
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 44 507
95 % 95 246 22
90 % 95 246 27
70 % 112 335 23
50 % 112 336 29
40 % 112 336 39
30 % 112 336 56
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 240 20
95 % 95 240 32
90 % 95 240 37
70 % 95 240 46
50 % 115 329 35
40 % 115 329 46
30 % 128 397 46
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 238 24
95 % 95 238 39
90 % 95 238 44
70 % 95 239 51
50 % 95 239 82
40 % 95 239 108
30 % 95 239 124
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 242 16
95 % 99 247 21
90 % 99 247 26
70 % 99 247 37
50 % 119 337 27
40 % 119 338 38
30 % 119 338 54
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 234 26
95 % 95 239 36
90 % 95 239 41
70 % 95 239 50
50 % 95 239 81
40 % 95 240 106
30 % 115 327 65
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 84 225
95 % 95 233 40
90 % 95 237 45
70 % 95 237 54
50 % 95 237 87
40 % 95 237 113
30 % 95 237 128
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 156 56
95 % 86 205 63
90 % 86 205 66
70 % 86 205 75
50 % 86 205 109
40 % 86 205 129
30 % 86 205 145
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 242 15
95 % 96 242 26
90 % 96 242 31
70 % 96 242 42
50 % 113 327 34
40 % 113 327 44
30 % 113 327 60
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 239 17
95 % 95 240 27
90 % 95 240 33
70 % 95 240 43
50 % 112 323 37
40 % 112 324 47
30 % 112 324 63
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 188 48
95 % 95 238 37
90 % 95 238 42
70 % 95 238 52
50 % 95 238 83
40 % 95 238 110
30 % 95 238 126
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 229 39
95 % 95 229 54
90 % 95 229 58
70 % 95 229 69
50 % 95 229 97
40 % 95 229 118
30 % 95 229 133
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 204 43
95 % 85 204 64
90 % 85 204 67
70 % 85 204 76
50 % 89 252 68
40 % 89 252 93
30 % 89 252 110
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 232 27
95 % 95 240 28
90 % 95 240 34
70 % 95 240 44
50 % 112 324 36
40 % 112 325 45
30 % 112 325 62
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 239 22
95 % 95 239 33
90 % 95 239 38
70 % 95 239 47
50 % 113 328 33
40 % 113 328 43
30 % 113 330 59
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 244 13
95 % 103 250 20
90 % 103 250 25
70 % 103 250 35
50 % 103 250 70
40 % 103 250 94
30 % 118 289 80
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 243 14
95 % 96 244 25
90 % 96 244 29
70 % 96 244 40
50 % 113 289 50
40 % 113 290 62
30 % 113 290 83
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 239 19
95 % 96 239 31
90 % 96 243 30
70 % 96 243 41
50 % 115 330 31
40 % 116 332 41
30 % 130 401 37
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 149 70
95 % 95 239 35
90 % 95 239 40
70 % 95 239 49
50 % 112 324 39
40 % 112 324 49
30 % 125 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.