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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G
Sequence Clustering and Redundancy Reduction Results
4DV0
Sequence Clusters for the Sequence Entities in PDB 4DV0
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 197 29
95% 73 198 45
90% 73 198 47
70% 73 198 59
50% 95 282 35
40% 95 282 45
30% 108 333 46
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 199 25
95% 73 199 40
90% 73 199 42
70% 73 199 54
50% 89 276 42
40% 104 333 35
30% 104 333 45
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 29 1089
95% 73 206 31
90% 73 206 33
70% 89 288 24
50% 89 288 34
40% 89 288 44
30% 89 288 69
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 200 22
95% 73 200 38
90% 73 200 40
70% 73 200 51
50% 92 281 39
40% 92 281 50
30% 105 334 49
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 198 26
95% 73 198 46
90% 73 198 48
70% 73 198 60
50% 73 198 92
40% 73 198 114
30% 73 198 138
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 202 20
95% 77 207 30
90% 77 207 32
70% 77 207 43
50% 96 289 33
40% 96 289 43
30% 96 289 67
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 194 30
95% 73 199 42
90% 73 199 44
70% 73 199 56
50% 73 199 89
40% 73 199 112
30% 92 279 76
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 80 222
95% 73 193 50
90% 73 197 49
70% 73 197 61
50% 73 197 93
40% 73 197 116
30% 73 197 139
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 125 59
95% 68 174 71
90% 68 174 75
70% 68 174 89
50% 68 174 130
40% 68 174 148
30% 68 174 164
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 202 19
95% 74 202 33
90% 74 202 36
70% 74 202 47
50% 90 279 38
40% 90 279 49
30% 90 279 73
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 199 23
95% 73 200 35
90% 73 200 38
70% 73 200 48
50% 73 200 88
40% 89 276 53
30% 89 276 75
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 149 54
95% 73 198 44
90% 73 198 46
70% 73 198 58
50% 73 198 91
40% 73 198 113
30% 73 198 137
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 189 32
95% 73 189 52
90% 73 189 55
70% 73 189 67
50% 73 189 112
40% 73 189 135
30% 73 189 153
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 173 48
95% 67 173 72
90% 67 173 76
70% 67 173 91
50% 70 214 76
40% 70 214 102
30% 70 214 122
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 192 31
95% 73 200 36
90% 73 200 39
70% 73 200 49
50% 89 276 40
40% 89 277 51
30% 89 277 74
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 199 24
95% 73 199 39
90% 73 199 41
70% 73 199 52
50% 90 280 37
40% 90 280 48
30% 90 282 72
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 204 17
95% 81 210 29
90% 81 210 31
70% 81 210 42
50% 81 210 82
40% 81 210 107
30% 96 248 87
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 203 18
95% 74 204 32
90% 74 204 34
70% 74 204 44
50% 91 246 54
40% 91 247 71
30% 91 247 94
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 199 21
95% 74 199 37
90% 74 203 35
70% 74 203 45
50% 92 282 36
40% 93 284 46
30% 107 338 44
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 109 86
95% 73 199 41
90% 73 199 43
70% 73 199 55
50% 89 276 41
40% 89 276 54
30% 102 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.