Sequence Similarity Clusters for the Entities in PDB 4DV0

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 267 37
95 % 108 268 51
90 % 108 268 54
70 % 108 268 65
50 % 138 394 25
40 % 138 394 37
30 % 153 490 29
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 269 35
95 % 108 269 47
90 % 108 269 50
70 % 108 269 60
50 % 132 388 34
40 % 149 487 18
30 % 149 487 31
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 51 459
95 % 108 276 36
90 % 108 276 40
70 % 132 401 20
50 % 132 403 23
40 % 132 403 34
30 % 132 403 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 270 33
95 % 108 270 44
90 % 108 270 48
70 % 108 270 57
50 % 135 393 32
40 % 135 393 44
30 % 150 491 32
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 268 36
95 % 108 268 52
90 % 108 268 55
70 % 108 270 58
50 % 108 270 87
40 % 108 270 108
30 % 108 270 120
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 272 28
95 % 112 277 35
90 % 112 277 39
70 % 112 277 50
50 % 139 401 24
40 % 139 404 33
30 % 139 404 54
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 264 38
95 % 108 269 49
90 % 108 269 52
70 % 108 269 62
50 % 108 271 86
40 % 108 271 106
30 % 135 389 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 87 234
95 % 108 263 53
90 % 108 267 56
70 % 108 267 66
50 % 108 267 90
40 % 108 267 111
30 % 108 267 123
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 183 53
95 % 98 234 62
90 % 98 234 66
70 % 98 234 77
50 % 98 234 103
40 % 98 234 129
30 % 98 234 140
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 272 27
95 % 109 272 40
90 % 109 272 45
70 % 109 272 54
50 % 133 393 28
40 % 133 393 39
30 % 133 393 58
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 269 31
95 % 108 270 41
90 % 108 270 46
70 % 108 270 55
50 % 132 387 33
40 % 132 390 42
30 % 132 390 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 217 49
95 % 108 268 50
90 % 108 268 53
70 % 108 268 64
50 % 108 268 89
40 % 108 268 110
30 % 108 268 122
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 259 41
95 % 108 259 56
90 % 108 259 59
70 % 108 259 69
50 % 108 259 94
40 % 108 259 116
30 % 108 259 129
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 233 45
95 % 97 233 63
90 % 97 233 67
70 % 97 233 78
50 % 101 301 78
40 % 101 301 96
30 % 101 301 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 262 39
95 % 108 270 42
90 % 108 270 47
70 % 108 270 56
50 % 132 389 31
40 % 132 392 40
30 % 132 392 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 269 34
95 % 108 269 46
90 % 108 269 49
70 % 108 269 59
50 % 133 393 29
40 % 133 393 41
30 % 133 395 57
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 274 24
95 % 116 280 33
90 % 116 280 38
70 % 116 280 49
50 % 116 280 83
40 % 116 280 102
30 % 138 334 87
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 273 26
95 % 109 274 37
90 % 109 274 41
70 % 109 274 51
50 % 133 336 65
40 % 133 339 75
30 % 133 339 89
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 269 32
95 % 109 269 43
90 % 109 273 42
70 % 109 273 52
50 % 135 394 26
40 % 136 398 36
30 % 153 500 28
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 178 65
95 % 108 269 48
90 % 108 269 51
70 % 108 269 61
50 % 132 388 35
40 % 132 388 45
30 % 147 488 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.