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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G
Sequence Clustering and Redundancy Reduction Results
4DV0
Sequence Clusters for the Sequence Entities in PDB 4DV0
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 257 29
95% 76 259 47
90% 76 259 51
70% 76 259 61
50% 114 374 34
40% 114 374 46
30% 114 379 66
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 260 26
95% 76 260 43
90% 76 260 46
70% 76 260 57
50% 108 368 42
40% 112 408 40
30% 112 408 53
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 29 962
95% 76 267 36
90% 76 267 38
70% 108 380 24
50% 108 380 33
40% 108 380 45
30% 108 380 69
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 261 22
95% 76 261 41
90% 76 261 43
70% 76 261 55
50% 108 370 39
40% 108 370 53
30% 110 406 57
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 259 27
95% 76 259 48
90% 76 259 52
70% 76 259 62
50% 76 259 97
40% 76 259 123
30% 76 259 141
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 263 20
95% 80 268 35
90% 80 268 37
70% 80 268 48
50% 115 381 32
40% 115 381 43
30% 115 381 68
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 255 30
95% 76 260 45
90% 76 260 48
70% 76 260 59
50% 76 260 94
40% 76 260 120
30% 108 368 78
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 92 220
95% 76 254 50
90% 76 258 53
70% 76 258 63
50% 76 258 99
40% 76 258 124
30% 76 258 142
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 175 50
95% 71 224 63
90% 71 224 67
70% 71 224 81
50% 71 224 115
40% 71 224 141
30% 71 224 162
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 226 37
95% 71 226 62
90% 71 226 65
70% 71 226 80
50% 109 371 38
40% 109 371 51
30% 109 371 75
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 260 24
95% 76 261 38
90% 76 261 41
70% 76 261 52
50% 76 261 92
40% 108 368 55
30% 108 368 77
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 198 43
95% 76 259 46
90% 76 259 50
70% 76 259 60
50% 76 259 96
40% 76 259 122
30% 76 259 140
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 241 34
95% 76 241 55
90% 76 241 58
70% 76 241 69
50% 76 241 107
40% 76 241 130
30% 76 241 151
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 222 39
95% 70 222 65
90% 70 222 69
70% 70 222 82
50% 82 285 76
40% 82 285 100
30% 82 285 124
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 253 31
95% 76 261 39
90% 76 261 42
70% 76 261 53
50% 108 368 40
40% 108 369 54
30% 108 369 76
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 260 25
95% 76 260 42
90% 76 260 44
70% 76 260 56
50% 109 372 37
40% 109 372 50
30% 109 374 72
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 265 18
95% 84 271 33
90% 84 271 35
70% 84 271 47
50% 84 271 87
40% 84 271 112
30% 106 318 94
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 264 19
95% 77 265 37
90% 77 265 39
70% 77 265 49
50% 98 313 56
40% 98 314 72
30% 98 314 96
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 260 21
95% 77 260 40
90% 77 264 40
70% 77 264 50
50% 111 374 35
40% 112 376 47
30% 115 413 52
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 147 79
95% 76 260 44
90% 76 260 47
70% 76 260 58
50% 108 368 41
40% 108 368 56
30% 110 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.