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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G
Sequence Clustering and Redundancy Reduction Results
4DV0
Sequence Clusters for the Sequence Entities in PDB 4DV0
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 204 25
95% 74 205 45
90% 74 205 47
70% 74 205 57
50% 96 290 35
40% 96 290 45
30% 109 342 46
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 206 23
95% 74 206 41
90% 74 206 43
70% 74 206 52
50% 90 284 41
40% 105 343 34
30% 105 344 45
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 33 847
95% 74 213 31
90% 74 213 34
70% 90 295 24
50% 90 296 34
40% 90 296 44
30% 90 296 67
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 207 20
95% 74 207 39
90% 74 207 41
70% 74 207 50
50% 93 289 39
40% 93 289 49
30% 106 343 48
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 205 24
95% 74 205 46
90% 74 205 48
70% 74 206 55
50% 74 206 85
40% 74 206 110
30% 74 206 129
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 209 18
95% 78 214 29
90% 78 214 32
70% 78 214 42
50% 97 297 33
40% 97 298 43
30% 97 298 65
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 201 29
95% 74 206 43
90% 74 206 45
70% 74 206 54
50% 74 206 84
40% 74 207 109
30% 93 287 74
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 80 223
95% 74 200 47
90% 74 204 49
70% 74 204 58
50% 74 204 87
40% 74 204 112
30% 74 204 131
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 131 56
95% 69 180 55
90% 69 180 57
70% 69 180 72
50% 69 180 119
40% 69 180 143
30% 69 180 159
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 209 17
95% 75 209 33
90% 75 209 37
70% 75 209 46
50% 91 287 38
40% 91 287 48
30% 91 287 71
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 206 21
95% 74 207 35
90% 74 207 38
70% 74 207 47
50% 90 283 43
40% 90 284 51
30% 90 284 73
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 156 52
95% 74 205 44
90% 74 205 46
70% 74 205 56
50% 74 205 86
40% 74 205 111
30% 74 205 130
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 196 32
95% 74 196 51
90% 74 196 53
70% 74 196 64
50% 74 196 97
40% 74 196 120
30% 74 196 143
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 179 36
95% 68 179 56
90% 68 179 59
70% 68 179 73
50% 71 220 77
40% 71 220 100
30% 71 220 120
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 199 30
95% 74 207 37
90% 74 207 40
70% 74 207 49
50% 90 284 40
40% 90 285 50
30% 90 285 72
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 206 22
95% 74 206 40
90% 74 206 42
70% 74 206 51
50% 91 288 37
40% 91 288 47
30% 91 290 69
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 211 15
95% 82 217 28
90% 82 217 31
70% 82 217 41
50% 82 217 78
40% 82 217 102
30% 97 256 85
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 210 16
95% 75 211 32
90% 75 211 35
70% 75 211 44
50% 92 254 51
40% 92 255 67
30% 92 255 88
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 206 19
95% 75 206 38
90% 75 210 36
70% 75 210 45
50% 93 290 36
40% 94 292 46
30% 108 347 44
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 116 81
95% 74 206 42
90% 74 206 44
70% 74 206 53
50% 90 284 42
40% 90 284 52
30% 103 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.