Sequence Similarity Clusters for the Entities in PDB 4DV0

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 267 37
95 % 108 268 52
90 % 108 268 55
70 % 108 268 67
50 % 138 397 25
40 % 138 397 36
30 % 153 496 31
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 269 35
95 % 108 269 48
90 % 108 269 51
70 % 108 269 62
50 % 132 391 33
40 % 149 493 18
30 % 149 493 33
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 51 479
95 % 108 276 37
90 % 108 276 41
70 % 132 404 20
50 % 132 409 23
40 % 132 409 33
30 % 132 409 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 270 33
95 % 108 270 45
90 % 108 270 49
70 % 108 270 59
50 % 135 396 31
40 % 135 396 44
30 % 150 497 34
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 268 36
95 % 108 268 53
90 % 108 268 56
70 % 108 270 60
50 % 108 270 89
40 % 108 270 111
30 % 108 270 123
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 272 29
95 % 112 277 36
90 % 112 277 40
70 % 112 277 51
50 % 139 404 24
40 % 139 407 34
30 % 139 407 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 264 38
95 % 108 269 50
90 % 108 269 53
70 % 108 269 64
50 % 108 271 88
40 % 108 271 109
30 % 135 392 64
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 87 242
95 % 108 263 54
90 % 108 267 57
70 % 108 267 68
50 % 108 267 93
40 % 108 267 114
30 % 108 267 127
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 183 54
95 % 98 234 62
90 % 98 234 66
70 % 98 234 78
50 % 98 234 107
40 % 98 234 132
30 % 98 234 141
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 272 28
95 % 109 272 41
90 % 109 272 46
70 % 109 272 56
50 % 133 396 27
40 % 133 399 38
30 % 133 399 57
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 269 31
95 % 108 270 42
90 % 108 270 47
70 % 108 270 57
50 % 132 390 32
40 % 132 393 43
30 % 132 393 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 217 49
95 % 108 268 51
90 % 108 268 54
70 % 108 268 66
50 % 108 268 91
40 % 108 268 112
30 % 108 268 124
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 259 42
95 % 108 259 57
90 % 108 259 61
70 % 108 259 73
50 % 108 259 96
40 % 108 259 119
30 % 108 259 130
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 233 45
95 % 97 233 63
90 % 97 233 67
70 % 97 233 79
50 % 101 304 81
40 % 101 304 100
30 % 101 304 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 262 39
95 % 108 270 43
90 % 108 270 48
70 % 108 270 58
50 % 132 392 30
40 % 132 395 41
30 % 132 395 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 269 34
95 % 108 269 47
90 % 108 269 50
70 % 108 269 61
50 % 133 396 29
40 % 133 396 42
30 % 133 398 59
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 274 26
95 % 116 280 34
90 % 116 280 39
70 % 116 280 50
50 % 116 280 86
40 % 116 280 105
30 % 138 334 90
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 273 27
95 % 109 274 39
90 % 109 274 43
70 % 109 274 54
50 % 133 338 68
40 % 133 341 78
30 % 133 341 91
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 269 32
95 % 109 269 44
90 % 109 273 44
70 % 109 273 55
50 % 135 397 26
40 % 136 401 35
30 % 153 506 29
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 178 66
95 % 108 269 49
90 % 108 269 52
70 % 108 269 63
50 % 132 391 34
40 % 132 391 45
30 % 147 494 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.