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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DUZ
Sequence Clusters for the Sequence Entities in PDB 4DUZ
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 218 36
95% 71 219 50
90% 71 219 54
70% 71 219 65
50% 90 306 31
40% 90 306 42
30% 103 359 42
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 220 34
95% 71 220 46
90% 71 220 50
70% 71 220 60
50% 84 300 42
40% 99 360 31
30% 99 361 41
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 36 712
95% 71 227 27
90% 71 227 32
70% 84 311 21
50% 84 312 30
40% 84 312 41
30% 84 312 56
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 221 32
95% 71 221 44
90% 71 221 48
70% 71 221 58
50% 85 305 38
40% 85 305 50
30% 98 360 47
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 219 35
95% 71 219 51
90% 71 219 55
70% 71 220 63
50% 71 220 92
40% 71 220 113
30% 71 220 126
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 223 28
95% 75 228 25
90% 75 228 29
70% 75 228 41
50% 91 313 28
40% 91 314 39
30% 91 314 55
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 215 37
95% 71 220 48
90% 71 220 52
70% 71 220 62
50% 71 220 91
40% 71 221 112
30% 85 303 69
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 80 223
95% 71 214 56
90% 71 218 57
70% 71 218 67
50% 71 218 94
40% 71 218 116
30% 71 218 128
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 145 55
95% 67 194 64
90% 67 194 66
70% 67 194 78
50% 67 194 111
40% 67 194 129
30% 67 194 148
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 223 27
95% 72 223 40
90% 72 223 45
70% 72 223 55
50% 85 303 35
40% 85 303 47
30% 85 303 65
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 220 30
95% 71 221 41
90% 71 221 46
70% 71 221 56
50% 84 299 41
40% 84 300 51
30% 84 300 68
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 170 49
95% 71 219 49
90% 71 219 53
70% 71 219 64
50% 71 219 93
40% 71 219 114
30% 71 219 127
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 210 39
95% 71 210 59
90% 71 210 62
70% 71 210 72
50% 71 210 98
40% 71 210 120
30% 71 210 133
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 193 45
95% 66 193 65
90% 66 193 67
70% 66 193 79
50% 69 236 78
40% 69 236 99
30% 69 236 119
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 213 38
95% 71 221 42
90% 71 221 47
70% 71 221 57
50% 84 300 39
40% 84 301 49
30% 84 301 67
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 220 33
95% 71 220 45
90% 71 220 49
70% 71 220 59
50% 85 304 34
40% 85 304 46
30% 85 306 64
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 225 24
95% 79 231 23
90% 79 231 28
70% 79 231 39
50% 79 231 82
40% 79 231 104
30% 91 270 77
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 224 26
95% 72 225 38
90% 72 225 42
70% 72 225 52
50% 84 268 50
40% 84 269 60
30% 84 269 80
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 220 31
95% 72 220 43
90% 72 224 43
70% 72 224 53
50% 87 306 33
40% 88 308 43
30% 102 364 40
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 130 75
95% 71 220 47
90% 71 220 51
70% 71 220 61
50% 84 300 43
40% 84 300 52
30% 97 355 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.