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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DUZ
Sequence Clusters for the Sequence Entities in PDB 4DUZ
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 187 27
95% 55 188 47
90% 55 188 50
70% 55 188 60
50% 72 269 34
40% 72 269 46
30% 72 274 65
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 189 25
95% 55 189 43
90% 55 189 46
70% 55 189 56
50% 66 263 41
40% 81 316 35
30% 81 316 44
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 29 1056
95% 55 196 35
90% 55 196 37
70% 66 275 24
50% 66 275 33
40% 66 275 45
30% 66 275 68
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 190 22
95% 55 190 41
90% 55 190 44
70% 55 190 54
50% 67 268 38
40% 67 268 51
30% 80 317 50
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 188 26
95% 55 188 48
90% 55 188 51
70% 55 188 61
50% 55 188 94
40% 55 188 119
30% 55 188 142
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 192 20
95% 59 197 33
90% 59 197 35
70% 59 197 47
50% 73 276 32
40% 73 276 43
30% 73 276 67
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 184 28
95% 55 189 45
90% 55 189 48
70% 55 189 58
50% 55 189 92
40% 55 189 117
30% 67 266 76
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 79 221
95% 55 183 49
90% 55 187 52
70% 55 187 62
50% 55 187 95
40% 55 187 120
30% 55 187 143
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 119 48
95% 51 168 61
90% 51 168 64
70% 51 168 80
50% 51 168 117
40% 51 168 139
30% 51 168 161
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 170 37
95% 51 170 59
90% 51 170 63
70% 51 170 78
50% 67 266 37
40% 67 266 49
30% 67 266 72
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 189 23
95% 55 190 38
90% 55 190 42
70% 55 190 52
50% 55 190 91
40% 66 263 53
30% 66 263 75
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 140 42
95% 55 188 46
90% 55 188 49
70% 55 188 59
50% 55 188 93
40% 55 188 118
30% 55 188 141
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 179 34
95% 55 179 53
90% 55 179 55
70% 55 179 68
50% 55 179 105
40% 55 179 132
30% 55 179 151
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 166 38
95% 50 166 63
90% 50 166 66
70% 50 166 82
50% 53 206 75
40% 53 206 100
30% 53 206 120
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 182 29
95% 55 190 39
90% 55 190 43
70% 55 190 53
50% 66 263 39
40% 66 264 52
30% 66 264 74
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 189 24
95% 55 189 42
90% 55 189 45
70% 55 189 55
50% 67 267 36
40% 67 267 48
30% 67 269 71
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 194 18
95% 63 200 29
90% 63 200 30
70% 63 200 44
50% 63 200 86
40% 63 200 108
30% 73 236 94
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 193 19
95% 56 194 36
90% 56 194 38
70% 56 194 49
50% 66 234 56
40% 66 235 74
30% 66 235 96
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 189 21
95% 56 189 40
90% 56 193 39
70% 56 193 51
50% 69 269 35
40% 70 271 47
30% 84 321 43
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 102 76
95% 55 189 44
90% 55 189 47
70% 55 189 57
50% 66 263 40
40% 66 263 54
30% 79 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.