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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DUZ
Sequence Clusters for the Sequence Entities in PDB 4DUZ
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 189 28
95% 55 190 47
90% 55 190 50
70% 55 190 60
50% 73 271 34
40% 73 271 46
30% 73 276 66
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 191 26
95% 55 191 43
90% 55 191 45
70% 55 191 56
50% 67 265 41
40% 82 318 35
30% 82 318 45
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 29 1062
95% 55 198 34
90% 55 198 36
70% 67 277 24
50% 67 277 33
40% 67 277 45
30% 67 277 69
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 192 23
95% 55 192 40
90% 55 192 43
70% 55 192 54
50% 68 270 38
40% 68 270 51
30% 81 319 49
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 190 27
95% 55 190 48
90% 55 190 51
70% 55 190 61
50% 55 190 94
40% 55 190 119
30% 55 190 142
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 194 21
95% 59 199 33
90% 59 199 35
70% 59 199 47
50% 74 278 32
40% 74 278 43
30% 74 278 67
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 186 29
95% 55 191 45
90% 55 191 48
70% 55 191 58
50% 55 191 92
40% 55 191 117
30% 68 268 78
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 79 223
95% 55 185 49
90% 55 189 52
70% 55 189 62
50% 55 189 95
40% 55 189 120
30% 55 189 143
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 119 50
95% 51 168 61
90% 51 168 64
70% 51 168 80
50% 51 168 117
40% 51 168 140
30% 51 168 163
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 170 37
95% 51 170 59
90% 51 170 63
70% 51 170 78
50% 68 268 37
40% 68 268 50
30% 68 268 74
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 191 24
95% 55 192 37
90% 55 192 41
70% 55 192 52
50% 55 192 91
40% 67 265 54
30% 67 265 77
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 142 42
95% 55 190 46
90% 55 190 49
70% 55 190 59
50% 55 190 93
40% 55 190 118
30% 55 190 141
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 181 34
95% 55 181 53
90% 55 181 55
70% 55 181 69
50% 55 181 105
40% 55 181 132
30% 55 181 151
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 167 38
95% 50 167 63
90% 50 167 66
70% 50 167 82
50% 53 206 77
40% 53 206 101
30% 53 206 122
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 184 30
95% 55 192 38
90% 55 192 42
70% 55 192 53
50% 67 265 39
40% 67 266 52
30% 67 266 76
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 191 25
95% 55 191 42
90% 55 191 44
70% 55 191 55
50% 68 269 36
40% 68 269 49
30% 68 271 73
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 196 19
95% 63 202 30
90% 63 202 31
70% 63 202 45
50% 63 202 84
40% 63 202 108
30% 74 239 93
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 195 20
95% 56 196 36
90% 56 196 38
70% 56 196 49
50% 67 237 56
40% 67 238 74
30% 67 238 96
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 191 22
95% 56 191 39
90% 56 195 39
70% 56 195 50
50% 70 271 35
40% 71 273 47
30% 85 323 44
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 102 77
95% 55 191 44
90% 55 191 46
70% 55 191 57
50% 67 265 40
40% 67 265 55
30% 80 314 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.