Sequence Similarity Clusters for the Entities in PDB 4DUZ

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 252 35
95 % 93 253 47
90 % 93 253 52
70 % 93 253 62
50 % 113 348 28
40 % 113 348 38
30 % 126 419 36
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 254 33
95 % 93 254 43
90 % 93 254 48
70 % 93 254 57
50 % 107 342 36
40 % 122 420 22
30 % 122 421 35
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 47 469
95 % 93 261 35
90 % 93 261 39
70 % 107 353 23
50 % 107 354 27
40 % 107 354 37
30 % 107 354 56
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 255 30
95 % 93 255 41
90 % 93 255 46
70 % 93 255 55
50 % 108 347 33
40 % 108 347 45
30 % 121 420 41
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 253 34
95 % 93 253 48
90 % 93 253 53
70 % 93 254 60
50 % 93 254 86
40 % 93 254 106
30 % 93 254 118
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 257 27
95 % 97 262 34
90 % 97 262 38
70 % 97 262 49
50 % 114 355 26
40 % 114 356 36
30 % 114 356 55
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 249 36
95 % 93 254 45
90 % 93 254 50
70 % 93 254 59
50 % 93 254 85
40 % 93 255 105
30 % 108 345 62
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 87 223
95 % 93 248 50
90 % 93 252 54
70 % 93 252 63
50 % 93 252 88
40 % 93 252 108
30 % 93 252 120
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 78 168 56
95 % 85 219 62
90 % 85 219 66
70 % 85 219 77
50 % 85 219 107
40 % 85 219 128
30 % 85 219 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 257 26
95 % 94 257 37
90 % 94 257 43
70 % 94 257 52
50 % 108 345 31
40 % 108 345 42
30 % 108 345 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 254 28
95 % 93 255 38
90 % 93 255 44
70 % 93 255 53
50 % 107 341 35
40 % 107 342 46
30 % 107 342 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 202 47
95 % 93 253 46
90 % 93 253 51
70 % 93 253 61
50 % 93 253 87
40 % 93 253 107
30 % 93 253 119
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 244 38
95 % 93 244 54
90 % 93 244 57
70 % 93 244 68
50 % 93 244 92
40 % 93 244 114
30 % 93 244 127
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 218 43
95 % 84 218 63
90 % 84 218 67
70 % 84 218 78
50 % 88 269 77
40 % 88 269 97
30 % 88 269 112
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 247 37
95 % 93 255 39
90 % 93 255 45
70 % 93 255 54
50 % 107 342 34
40 % 107 343 44
30 % 107 343 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 254 32
95 % 93 254 42
90 % 93 254 47
70 % 93 254 56
50 % 108 346 30
40 % 108 346 41
30 % 108 348 57
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 259 24
95 % 101 265 21
90 % 101 265 24
70 % 101 265 32
50 % 101 265 79
40 % 101 265 100
30 % 113 304 78
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 258 25
95 % 94 259 36
90 % 94 259 41
70 % 94 259 50
50 % 106 304 51
40 % 106 305 63
30 % 106 305 86
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 254 29
95 % 94 254 40
90 % 94 258 42
70 % 94 258 51
50 % 110 348 29
40 % 111 350 39
30 % 125 424 34
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 163 72
95 % 93 254 44
90 % 93 254 49
70 % 93 254 58
50 % 107 342 37
40 % 107 342 47
30 % 120 415 43

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.