Sequence Similarity Clusters for the Entities in PDB 4DUZ

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 267 37
95 % 94 268 51
90 % 94 268 54
70 % 94 268 65
50 % 121 394 25
40 % 121 394 37
30 % 134 490 29
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 269 35
95 % 94 269 47
90 % 94 269 50
70 % 94 269 60
50 % 115 388 34
40 % 130 487 18
30 % 130 487 31
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 51 459
95 % 94 276 36
90 % 94 276 40
70 % 115 401 20
50 % 115 403 23
40 % 115 403 34
30 % 115 403 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 270 33
95 % 94 270 44
90 % 94 270 48
70 % 94 270 57
50 % 116 393 32
40 % 116 393 44
30 % 129 491 32
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 268 36
95 % 94 268 52
90 % 94 268 55
70 % 94 270 58
50 % 94 270 87
40 % 94 270 108
30 % 94 270 120
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 272 28
95 % 98 277 35
90 % 98 277 39
70 % 98 277 50
50 % 122 401 24
40 % 122 404 33
30 % 122 404 54
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 264 38
95 % 94 269 49
90 % 94 269 52
70 % 94 269 62
50 % 94 271 86
40 % 94 271 106
30 % 116 389 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 87 234
95 % 94 263 53
90 % 94 267 56
70 % 94 267 66
50 % 94 267 90
40 % 94 267 111
30 % 94 267 123
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 183 53
95 % 86 234 62
90 % 86 234 66
70 % 86 234 77
50 % 86 234 103
40 % 86 234 129
30 % 86 234 140
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 272 27
95 % 95 272 40
90 % 95 272 45
70 % 95 272 54
50 % 116 393 28
40 % 116 393 39
30 % 116 393 58
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 269 31
95 % 94 270 41
90 % 94 270 46
70 % 94 270 55
50 % 115 387 33
40 % 115 390 42
30 % 115 390 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 217 49
95 % 94 268 50
90 % 94 268 53
70 % 94 268 64
50 % 94 268 89
40 % 94 268 110
30 % 94 268 122
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 259 41
95 % 94 259 56
90 % 94 259 59
70 % 94 259 69
50 % 94 259 94
40 % 94 259 116
30 % 94 259 129
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 233 45
95 % 85 233 63
90 % 85 233 67
70 % 85 233 78
50 % 89 301 78
40 % 89 301 96
30 % 89 301 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 262 39
95 % 94 270 42
90 % 94 270 47
70 % 94 270 56
50 % 115 389 31
40 % 115 392 40
30 % 115 392 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 269 34
95 % 94 269 46
90 % 94 269 49
70 % 94 269 59
50 % 116 393 29
40 % 116 393 41
30 % 116 395 57
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 274 24
95 % 102 280 33
90 % 102 280 38
70 % 102 280 49
50 % 102 280 83
40 % 102 280 102
30 % 121 334 87
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 273 26
95 % 95 274 37
90 % 95 274 41
70 % 95 274 51
50 % 114 336 65
40 % 114 339 75
30 % 114 339 89
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 269 32
95 % 95 269 43
90 % 95 273 42
70 % 95 273 52
50 % 118 394 26
40 % 119 398 36
30 % 133 500 28
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 178 65
95 % 94 269 48
90 % 94 269 51
70 % 94 269 61
50 % 115 388 35
40 % 115 388 45
30 % 128 488 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.