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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DUZ
Sequence Clusters for the Sequence Entities in PDB 4DUZ
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 217 36
95% 71 218 51
90% 71 218 55
70% 71 218 66
50% 91 306 31
40% 91 306 42
30% 104 368 40
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 219 34
95% 71 219 47
90% 71 219 51
70% 71 219 61
50% 85 300 42
40% 100 369 30
30% 100 370 38
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 36 727
95% 71 226 39
90% 71 226 43
70% 85 311 22
50% 85 312 30
40% 85 312 41
30% 85 312 57
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 220 32
95% 71 220 45
90% 71 220 49
70% 71 220 59
50% 86 305 39
40% 86 305 50
30% 99 369 44
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 218 35
95% 71 218 52
90% 71 218 56
70% 71 219 64
50% 71 219 92
40% 71 219 114
30% 71 219 128
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 222 29
95% 75 227 36
90% 75 227 40
70% 75 227 52
50% 92 313 29
40% 92 314 39
30% 92 314 54
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 214 37
95% 71 219 49
90% 71 219 53
70% 71 219 63
50% 71 219 91
40% 71 220 113
30% 86 303 70
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 80 226
95% 71 213 56
90% 71 217 58
70% 71 217 69
50% 71 217 94
40% 71 217 116
30% 71 217 130
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 145 55
95% 67 194 64
90% 67 194 67
70% 67 194 79
50% 67 194 113
40% 67 194 131
30% 67 194 150
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 222 28
95% 72 222 41
90% 72 222 46
70% 72 222 56
50% 86 303 38
40% 86 303 48
30% 86 303 67
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 219 30
95% 71 220 42
90% 71 220 47
70% 71 220 57
50% 85 299 41
40% 85 300 51
30% 85 300 69
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 169 49
95% 71 218 50
90% 71 218 54
70% 71 218 65
50% 71 218 93
40% 71 218 115
30% 71 218 129
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 209 40
95% 71 209 59
90% 71 209 62
70% 71 209 73
50% 71 209 100
40% 71 209 123
30% 71 209 135
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 193 45
95% 66 193 65
90% 66 193 68
70% 66 193 80
50% 70 237 77
40% 70 237 102
30% 70 237 121
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 212 38
95% 71 220 43
90% 71 220 48
70% 71 220 58
50% 85 300 40
40% 85 301 49
30% 85 301 68
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 219 33
95% 71 219 46
90% 71 219 50
70% 71 219 60
50% 86 304 37
40% 86 304 47
30% 86 306 63
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 224 25
95% 79 230 24
90% 79 230 29
70% 79 230 41
50% 79 230 83
40% 79 230 108
30% 91 269 80
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 223 27
95% 72 224 40
90% 72 224 44
70% 72 224 54
50% 84 267 51
40% 84 268 64
30% 84 268 83
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 219 31
95% 72 219 44
90% 72 223 45
70% 72 223 55
50% 88 306 35
40% 89 308 43
30% 103 373 37
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 130 75
95% 71 219 48
90% 71 219 52
70% 71 219 62
50% 85 300 43
40% 85 300 52
30% 98 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.