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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin
Sequence Clustering and Redundancy Reduction Results
4DUZ
Sequence Clusters for the Sequence Entities in PDB 4DUZ
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 204 25
95% 62 205 45
90% 62 205 47
70% 62 205 57
50% 81 290 35
40% 81 290 45
30% 94 342 46
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 206 23
95% 62 206 41
90% 62 206 43
70% 62 206 52
50% 75 284 41
40% 90 343 34
30% 90 344 45
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 33 848
95% 62 213 32
90% 62 213 35
70% 75 295 24
50% 75 296 34
40% 75 296 44
30% 75 296 67
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 207 20
95% 62 207 39
90% 62 207 41
70% 62 207 50
50% 76 289 39
40% 76 289 49
30% 89 343 48
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 205 24
95% 62 205 46
90% 62 205 48
70% 62 206 55
50% 62 206 85
40% 62 206 110
30% 62 206 129
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 209 18
95% 66 214 30
90% 66 214 33
70% 66 214 43
50% 82 297 33
40% 82 298 43
30% 82 298 65
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 201 29
95% 62 206 43
90% 62 206 45
70% 62 206 54
50% 62 206 84
40% 62 207 109
30% 76 287 74
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 80 223
95% 62 200 47
90% 62 204 49
70% 62 204 58
50% 62 204 87
40% 62 204 112
30% 62 204 131
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 131 56
95% 58 180 55
90% 58 180 57
70% 58 180 72
50% 58 180 119
40% 58 180 143
30% 58 180 159
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 209 17
95% 63 209 34
90% 63 209 38
70% 63 209 47
50% 76 287 38
40% 76 287 48
30% 76 287 71
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 206 21
95% 62 207 36
90% 62 207 39
70% 62 207 48
50% 75 283 43
40% 75 284 51
30% 75 284 73
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 156 52
95% 62 205 44
90% 62 205 46
70% 62 205 56
50% 62 205 86
40% 62 205 111
30% 62 205 130
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 196 32
95% 62 196 51
90% 62 196 53
70% 62 196 64
50% 62 196 97
40% 62 196 120
30% 62 196 143
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 179 36
95% 57 179 56
90% 57 179 59
70% 57 179 73
50% 60 220 77
40% 60 220 101
30% 60 220 120
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 199 30
95% 62 207 37
90% 62 207 40
70% 62 207 49
50% 75 284 40
40% 75 285 50
30% 75 285 72
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 206 22
95% 62 206 40
90% 62 206 42
70% 62 206 51
50% 76 288 37
40% 76 288 47
30% 76 290 69
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 211 15
95% 70 217 28
90% 70 217 31
70% 70 217 41
50% 70 217 78
40% 70 217 102
30% 82 256 85
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 210 16
95% 63 211 33
90% 63 211 36
70% 63 211 45
50% 75 254 52
40% 75 255 67
30% 75 255 88
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 206 19
95% 63 206 38
90% 63 210 37
70% 63 210 46
50% 78 290 36
40% 79 292 46
30% 93 347 44
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 116 81
95% 62 206 42
90% 62 206 44
70% 62 206 53
50% 75 284 42
40% 75 284 52
30% 88 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.