Sequence Similarity Clusters for the Entities in PDB 4DUY

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 267 37
95 % 43 268 52
90 % 43 268 55
70 % 43 268 67
50 % 56 397 25
40 % 56 397 36
30 % 59 496 31
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 269 35
95 % 43 269 48
90 % 43 269 51
70 % 43 269 62
50 % 50 391 33
40 % 55 493 18
30 % 55 493 33
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 51 479
95 % 43 276 37
90 % 43 276 41
70 % 50 404 20
50 % 50 409 23
40 % 50 409 33
30 % 50 409 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 270 33
95 % 43 270 45
90 % 43 270 49
70 % 43 270 59
50 % 50 396 31
40 % 50 396 44
30 % 53 497 34
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 268 36
95 % 43 268 53
90 % 43 268 56
70 % 43 270 60
50 % 43 270 89
40 % 43 270 111
30 % 43 270 123
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 272 29
95 % 45 277 36
90 % 45 277 40
70 % 45 277 51
50 % 55 404 24
40 % 55 407 34
30 % 55 407 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 264 38
95 % 43 269 50
90 % 43 269 53
70 % 43 269 64
50 % 43 271 88
40 % 43 271 109
30 % 50 392 64
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 87 242
95 % 43 263 54
90 % 43 267 57
70 % 43 267 68
50 % 43 267 93
40 % 43 267 114
30 % 43 267 127
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 183 54
95 % 39 234 62
90 % 39 234 66
70 % 39 234 78
50 % 39 234 107
40 % 39 234 132
30 % 39 234 141
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 272 28
95 % 44 272 41
90 % 44 272 46
70 % 44 272 56
50 % 51 396 27
40 % 51 399 38
30 % 51 399 57
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 269 31
95 % 43 270 42
90 % 43 270 47
70 % 43 270 57
50 % 50 390 32
40 % 50 393 43
30 % 50 393 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 217 49
95 % 43 268 51
90 % 43 268 54
70 % 43 268 66
50 % 43 268 91
40 % 43 268 112
30 % 43 268 124
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 259 42
95 % 43 259 57
90 % 43 259 61
70 % 43 259 73
50 % 43 259 96
40 % 43 259 119
30 % 43 259 130
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 233 45
95 % 39 233 63
90 % 39 233 67
70 % 39 233 79
50 % 40 304 81
40 % 40 304 100
30 % 40 304 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 262 39
95 % 43 270 43
90 % 43 270 48
70 % 43 270 58
50 % 50 392 30
40 % 50 395 41
30 % 50 395 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 269 34
95 % 43 269 47
90 % 43 269 50
70 % 43 269 61
50 % 51 396 29
40 % 51 396 42
30 % 51 398 59
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 274 26
95 % 50 280 34
90 % 50 280 39
70 % 50 280 50
50 % 50 280 86
40 % 50 280 105
30 % 58 334 90
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 273 27
95 % 44 274 39
90 % 44 274 43
70 % 44 274 54
50 % 51 338 68
40 % 51 341 78
30 % 51 341 91
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 269 32
95 % 44 269 44
90 % 44 273 44
70 % 44 273 55
50 % 52 397 26
40 % 53 401 35
30 % 57 506 29
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 178 66
95 % 43 269 49
90 % 43 269 52
70 % 43 269 63
50 % 50 391 34
40 % 50 391 45
30 % 53 494 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.