POP-OUT | CLOSE

An Information Portal to 107754 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C
Sequence Clustering and Redundancy Reduction Results
4DUY
Sequence Clusters for the Sequence Entities in PDB 4DUY
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 196 28
95% 27 197 44
90% 27 197 46
70% 27 197 58
50% 35 280 35
40% 35 280 45
30% 38 331 46
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 198 24
95% 27 198 40
90% 27 198 42
70% 27 198 54
50% 29 274 42
40% 34 330 35
30% 34 330 47
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 29 1086
95% 27 205 31
90% 27 205 33
70% 29 286 24
50% 29 286 34
40% 29 286 44
30% 29 286 69
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 199 21
95% 27 199 37
90% 27 199 39
70% 27 199 51
50% 29 279 39
40% 29 279 51
30% 32 331 49
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 197 25
95% 27 197 45
90% 27 197 47
70% 27 197 59
50% 27 197 92
40% 27 197 114
30% 27 197 137
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 201 19
95% 29 206 30
90% 29 206 32
70% 29 206 43
50% 34 287 33
40% 34 287 43
30% 34 287 68
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 193 29
95% 27 198 42
90% 27 198 44
70% 27 198 56
50% 27 198 90
40% 27 198 112
30% 29 277 75
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 80 222
95% 27 192 49
90% 27 196 48
70% 27 196 60
50% 27 196 93
40% 27 196 116
30% 27 196 139
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 125 58
95% 25 174 71
90% 25 174 75
70% 25 174 88
50% 25 174 128
40% 25 174 146
30% 25 174 164
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 176 45
95% 26 176 67
90% 26 176 70
70% 26 176 83
50% 30 277 38
40% 30 277 49
30% 30 277 72
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 198 22
95% 27 199 34
90% 27 199 37
70% 27 199 48
50% 27 199 88
40% 29 274 53
30% 29 274 74
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 148 54
95% 27 197 43
90% 27 197 45
70% 27 197 57
50% 27 197 91
40% 27 197 113
30% 27 197 136
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 188 31
95% 27 188 51
90% 27 188 54
70% 27 188 67
50% 27 188 111
40% 27 188 133
30% 27 188 153
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 173 48
95% 25 173 72
90% 25 173 76
70% 25 173 90
50% 25 213 76
40% 25 213 102
30% 25 213 122
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 191 30
95% 27 199 35
90% 27 199 38
70% 27 199 49
50% 29 274 40
40% 29 275 52
30% 29 275 73
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 198 23
95% 27 198 39
90% 27 198 41
70% 27 198 53
50% 30 278 37
40% 30 278 48
30% 30 280 71
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 203 17
95% 34 209 29
90% 34 209 31
70% 34 209 42
50% 34 209 80
40% 34 209 106
30% 38 247 87
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 202 18
95% 28 203 32
90% 28 203 34
70% 28 203 45
50% 31 245 53
40% 31 246 70
30% 31 246 94
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 198 20
95% 28 198 36
90% 28 202 35
70% 28 202 46
50% 31 280 36
40% 32 282 46
30% 36 335 44
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 108 87
95% 27 198 41
90% 27 198 43
70% 27 198 55
50% 29 274 41
40% 29 274 54
30% 32 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.