Sequence Similarity Clusters for the Entities in PDB 4DUY

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 245 34
95 % 41 246 47
90 % 41 246 52
70 % 41 246 63
50 % 50 340 29
40 % 50 340 39
30 % 53 406 41
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 247 32
95 % 41 247 43
90 % 41 247 48
70 % 41 247 57
50 % 44 334 37
40 % 49 407 27
30 % 49 408 40
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 46 468
95 % 41 254 35
90 % 41 254 40
70 % 44 345 23
50 % 44 346 28
40 % 44 346 38
30 % 44 346 57
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 248 30
95 % 41 248 41
90 % 41 248 46
70 % 41 248 55
50 % 44 339 34
40 % 44 339 46
30 % 47 407 44
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 246 33
95 % 41 246 48
90 % 41 246 53
70 % 41 247 60
50 % 41 247 85
40 % 41 247 107
30 % 41 247 119
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 250 27
95 % 43 255 33
90 % 43 255 38
70 % 43 255 48
50 % 49 347 27
40 % 49 348 37
30 % 49 348 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 242 35
95 % 41 247 45
90 % 41 247 50
70 % 41 247 59
50 % 41 247 84
40 % 41 248 105
30 % 44 337 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 84 229
95 % 41 241 49
90 % 41 245 54
70 % 41 245 64
50 % 41 245 87
40 % 41 245 109
30 % 41 245 121
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 163 56
95 % 37 212 63
90 % 37 212 66
70 % 37 212 77
50 % 37 212 108
40 % 37 212 129
30 % 37 212 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 250 26
95 % 42 250 37
90 % 42 250 43
70 % 42 250 52
50 % 45 337 33
40 % 45 337 44
30 % 45 337 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 247 28
95 % 41 248 38
90 % 41 248 44
70 % 41 248 53
50 % 44 333 36
40 % 44 334 47
30 % 44 334 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 196 46
95 % 41 246 46
90 % 41 246 51
70 % 41 246 62
50 % 41 246 86
40 % 41 246 108
30 % 41 246 120
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 237 39
95 % 41 237 55
90 % 41 237 59
70 % 41 237 69
50 % 41 237 93
40 % 41 237 115
30 % 41 237 130
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 211 43
95 % 37 211 64
90 % 37 211 67
70 % 37 211 78
50 % 38 261 80
40 % 38 261 98
30 % 38 261 116
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 240 36
95 % 41 248 39
90 % 41 248 45
70 % 41 248 54
50 % 44 334 35
40 % 44 335 45
30 % 44 335 60
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 247 31
95 % 41 247 42
90 % 41 247 47
70 % 41 247 56
50 % 45 338 32
40 % 45 338 43
30 % 45 340 58
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 252 24
95 % 48 258 32
90 % 48 258 36
70 % 48 258 47
50 % 48 258 82
40 % 48 258 101
30 % 52 297 79
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 251 25
95 % 42 252 36
90 % 42 252 41
70 % 42 252 50
50 % 45 297 49
40 % 45 298 62
30 % 45 298 86
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 247 29
95 % 42 247 40
90 % 42 251 42
70 % 42 251 51
50 % 46 340 31
40 % 47 342 40
30 % 51 411 39
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 157 70
95 % 41 247 44
90 % 41 247 49
70 % 41 247 58
50 % 44 334 38
40 % 44 334 48
30 % 47 402 45

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.