Sequence Similarity Clusters for the Entities in PDB 4DSS

Entity #1 | Chains: A
Peroxiredoxin type-2 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64103
95 % 3 5 4944 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 3 5 4964
70 % 3 5 4842
50 % 3 5 4633
40 % 3 5 4405
30 % 23 28 658
Entity #2 | Chains: B
Thioredoxin-2 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 47399
95 % 1 4 15227 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 4 14951
70 % 3 9 6448
50 % 84 185 131
40 % 94 201 130
30 % 109 237 123

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures