Sequence Similarity Clusters for the Entities in PDB 4DSS

Entity #1 | Chains: A
Peroxiredoxin type-2 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64946
95 % 3 5 5021 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 3 5 5045
70 % 3 5 4921
50 % 3 5 4700
40 % 3 5 4456
30 % 23 28 673
Entity #2 | Chains: B
Thioredoxin-2 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48011
95 % 1 4 15454 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 4 15168
70 % 3 9 6545
50 % 85 186 135
40 % 95 202 131
30 % 110 238 125

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures