Sequence Similarity Clusters for the Entities in PDB 4DSJ

Entity #1 | Chains: A,B
DNA polymerase protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 46 789
95 % 93 95 290 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 93 95 301
70 % 93 95 345
50 % 93 95 411
40 % 93 95 435
30 % 93 95 435
Entity #2 | Chains: C,E
DNA dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
dGTP dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.