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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR7
Sequence Clusters for the Sequence Entities in PDB 4DR7
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 252 29
95% 59 254 48
90% 59 254 51
70% 59 254 63
50% 89 369 34
40% 89 369 47
30% 89 374 66
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 255 27
95% 59 255 44
90% 59 255 47
70% 59 255 59
50% 83 363 42
40% 87 403 39
30% 87 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 29 956
95% 59 262 36
90% 59 262 38
70% 83 375 24
50% 83 375 33
40% 83 375 46
30% 83 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 256 24
95% 59 256 42
90% 59 256 45
70% 59 256 57
50% 83 365 39
40% 83 365 53
30% 85 401 55
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 254 28
95% 59 254 49
90% 59 254 52
70% 59 254 64
50% 59 254 97
40% 59 254 122
30% 59 254 144
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 258 21
95% 63 263 35
90% 63 263 37
70% 63 263 48
50% 90 376 32
40% 90 376 44
30% 90 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 250 30
95% 59 255 46
90% 59 255 49
70% 59 255 61
50% 59 255 95
40% 59 255 120
30% 83 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 92 218
95% 59 249 51
90% 59 253 53
70% 59 253 65
50% 59 253 98
40% 59 253 124
30% 59 253 146
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 172 49
95% 56 221 64
90% 56 221 68
70% 56 221 81
50% 56 221 116
40% 56 221 144
30% 56 221 166
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 223 38
95% 56 223 63
90% 56 223 67
70% 56 223 80
50% 84 366 38
40% 84 366 52
30% 84 366 74
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 255 25
95% 59 256 39
90% 59 256 43
70% 59 256 55
50% 59 256 94
40% 83 363 55
30% 83 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 193 43
95% 59 254 47
90% 59 254 50
70% 59 254 62
50% 59 254 96
40% 59 254 121
30% 59 254 143
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 238 34
95% 59 238 55
90% 59 238 59
70% 59 238 71
50% 59 238 110
40% 59 238 133
30% 59 238 153
Entity #22: Chains: V - 5'-R(*UP*UP*UP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: a - 5'-R(P*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: b - 5'-R(P*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 219 39
95% 55 219 66
90% 55 219 70
70% 55 219 83
50% 65 282 81
40% 65 282 101
30% 65 282 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 248 32
95% 59 256 40
90% 59 256 44
70% 59 256 56
50% 83 363 40
40% 83 364 54
30% 83 364 75
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 255 26
95% 59 255 43
90% 59 255 46
70% 59 255 58
50% 84 367 37
40% 84 367 51
30% 84 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 260 18
95% 67 266 34
90% 67 266 36
70% 67 266 47
50% 67 266 88
40% 67 266 110
30% 83 313 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 259 20
95% 60 260 37
90% 60 260 39
70% 60 260 50
50% 75 308 57
40% 75 309 73
30% 75 309 97
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 255 23
95% 60 255 41
90% 60 259 40
70% 60 259 52
50% 86 369 36
40% 87 371 48
30% 90 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 142 81
95% 59 255 45
90% 59 255 48
70% 59 255 60
50% 83 363 41
40% 83 363 56
30% 85 399 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.