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An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR7
Sequence Clusters for the Sequence Entities in PDB 4DR7
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 193 28
95% 56 194 45
90% 56 194 47
70% 56 194 58
50% 74 275 34
40% 74 275 45
30% 74 280 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 195 26
95% 56 195 41
90% 56 195 43
70% 56 195 54
50% 68 269 41
40% 83 322 35
30% 83 322 44
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 29 1063
95% 56 202 32
90% 56 202 33
70% 68 281 23
50% 68 281 33
40% 68 281 44
30% 68 281 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 196 23
95% 56 196 39
90% 56 196 41
70% 56 196 52
50% 69 274 38
40% 69 274 50
30% 82 323 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 194 27
95% 56 194 46
90% 56 194 48
70% 56 194 59
50% 56 194 92
40% 56 194 115
30% 56 194 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 198 21
95% 60 203 30
90% 60 203 31
70% 60 203 43
50% 75 282 32
40% 75 282 42
30% 75 282 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 190 29
95% 56 195 43
90% 56 195 45
70% 56 195 56
50% 56 195 89
40% 56 195 113
30% 69 272 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 79 223
95% 56 189 48
90% 56 193 50
70% 56 193 61
50% 56 193 95
40% 56 193 120
30% 56 193 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 123 47
95% 53 172 58
90% 53 172 62
70% 53 172 76
50% 53 172 111
40% 53 172 137
30% 53 172 156
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 174 36
95% 53 174 57
90% 53 174 61
70% 53 174 75
50% 69 272 37
40% 69 272 49
30% 69 272 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 195 24
95% 56 196 36
90% 56 196 39
70% 56 196 50
50% 56 196 87
40% 68 269 52
30% 68 269 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 146 42
95% 56 194 44
90% 56 194 46
70% 56 194 57
50% 56 194 91
40% 56 194 114
30% 56 194 136
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 185 32
95% 56 185 51
90% 56 185 54
70% 56 185 65
50% 56 185 101
40% 56 185 127
30% 56 185 147
Entity #22: Chains: V - 5'-R(*UP*UP*UP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: a - 5'-R(P*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: b - 5'-R(P*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 171 37
95% 52 171 59
90% 52 171 63
70% 52 171 77
50% 55 210 73
40% 55 210 97
30% 55 210 120
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 188 30
95% 56 196 37
90% 56 196 40
70% 56 196 51
50% 68 269 39
40% 68 270 51
30% 68 270 73
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 195 25
95% 56 195 40
90% 56 195 42
70% 56 195 53
50% 69 273 36
40% 69 273 48
30% 69 275 70
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 200 17
95% 64 206 29
90% 64 206 30
70% 64 206 40
50% 64 206 80
40% 64 206 105
30% 75 243 90
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 199 20
95% 57 200 33
90% 57 200 34
70% 57 200 47
50% 68 241 54
40% 68 242 70
30% 68 242 94
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 195 22
95% 57 195 38
90% 57 199 35
70% 57 199 48
50% 71 275 35
40% 72 277 46
30% 86 327 43
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 106 73
95% 56 195 42
90% 56 195 44
70% 56 195 55
50% 68 269 40
40% 68 269 53
30% 81 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.