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An Information Portal to 108395 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR7
Sequence Clusters for the Sequence Entities in PDB 4DR7
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 197 29
95% 58 198 45
90% 58 198 47
70% 58 198 60
50% 77 283 35
40% 77 283 45
30% 90 334 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 199 26
95% 58 199 40
90% 58 199 42
70% 58 199 54
50% 71 277 41
40% 86 335 35
30% 86 336 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 29 1089
95% 58 206 31
90% 58 206 33
70% 71 288 24
50% 71 289 34
40% 71 289 44
30% 71 289 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 200 23
95% 58 200 38
90% 58 200 40
70% 58 200 51
50% 72 282 39
40% 72 282 50
30% 85 335 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 198 27
95% 58 198 46
90% 58 198 48
70% 58 199 57
50% 58 199 90
40% 58 199 113
30% 58 199 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 202 21
95% 62 207 30
90% 62 207 32
70% 62 207 43
50% 78 290 33
40% 78 291 43
30% 78 291 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 194 30
95% 58 199 42
90% 58 199 44
70% 58 199 56
50% 58 199 89
40% 58 200 112
30% 72 280 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 80 222
95% 58 193 50
90% 58 197 49
70% 58 197 61
50% 58 197 93
40% 58 197 116
30% 58 197 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 125 59
95% 55 174 71
90% 55 174 75
70% 55 174 89
50% 55 174 130
40% 55 174 148
30% 55 174 164
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 202 20
95% 59 202 33
90% 59 202 36
70% 59 202 47
50% 72 280 38
40% 72 280 49
30% 72 280 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 199 24
95% 58 200 35
90% 58 200 38
70% 58 200 48
50% 71 276 43
40% 71 277 52
30% 71 277 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 149 54
95% 58 198 44
90% 58 198 46
70% 58 198 59
50% 58 198 92
40% 58 198 114
30% 58 198 138
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 189 32
95% 58 189 52
90% 58 189 55
70% 58 189 67
50% 58 189 112
40% 58 189 135
30% 58 189 153
Entity #22: Chains: V - 5'-R(*UP*UP*UP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: a - 5'-R(P*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: b - 5'-R(P*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 173 48
95% 54 173 72
90% 54 173 76
70% 54 173 91
50% 57 214 77
40% 57 214 102
30% 57 214 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 192 31
95% 58 200 36
90% 58 200 39
70% 58 200 49
50% 71 277 40
40% 71 278 51
30% 71 278 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 199 25
95% 58 199 39
90% 58 199 41
70% 58 199 52
50% 72 281 37
40% 72 281 48
30% 72 283 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 204 18
95% 66 210 29
90% 66 210 31
70% 66 210 42
50% 66 210 83
40% 66 210 107
30% 78 249 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 203 19
95% 59 204 32
90% 59 204 34
70% 59 204 44
50% 71 247 55
40% 71 248 70
30% 71 248 94
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 199 22
95% 59 199 37
90% 59 203 35
70% 59 203 45
50% 74 283 36
40% 75 285 46
30% 89 339 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 109 86
95% 58 199 41
90% 58 199 43
70% 58 199 55
50% 71 277 42
40% 71 277 54
30% 84 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.