4DR7

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound


Sequence Similarity Clusters for the Entities in PDB 4DR7

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 253 36
95 % 90 254 49
90 % 90 254 54
70 % 90 254 64
50 % 117 361 28
40 % 117 361 38
30 % 130 434 36
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 255 34
95 % 90 255 45
90 % 90 255 50
70 % 90 255 59
50 % 111 355 35
40 % 126 436 20
30 % 126 437 34
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 497
95 % 90 262 36
90 % 90 262 41
70 % 111 366 21
50 % 111 367 27
40 % 111 367 37
30 % 111 367 57
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 256 32
95 % 90 256 43
90 % 90 256 48
70 % 90 256 57
50 % 112 360 32
40 % 112 360 44
30 % 125 435 39
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 254 35
95 % 90 254 50
90 % 90 254 55
70 % 90 255 62
50 % 90 255 87
40 % 90 255 108
30 % 90 255 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 258 29
95 % 94 263 35
90 % 94 263 40
70 % 94 263 50
50 % 118 368 26
40 % 118 369 36
30 % 118 369 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 250 37
95 % 90 255 47
90 % 90 255 52
70 % 90 255 61
50 % 90 255 86
40 % 90 256 107
30 % 112 358 62
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 87 224
95 % 90 249 52
90 % 90 253 56
70 % 90 253 65
50 % 90 253 89
40 % 90 253 111
30 % 90 253 124
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 169 57
95 % 83 220 64
90 % 83 220 69
70 % 83 220 79
50 % 83 220 110
40 % 83 220 132
30 % 83 220 142
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 258 28
95 % 91 258 38
90 % 91 258 44
70 % 91 258 53
50 % 112 358 31
40 % 112 358 41
30 % 112 358 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 255 30
95 % 90 256 40
90 % 90 256 46
70 % 90 256 55
50 % 111 354 34
40 % 111 355 45
30 % 111 355 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 203 48
95 % 90 254 48
90 % 90 254 53
70 % 90 254 63
50 % 90 254 88
40 % 90 254 109
30 % 90 254 121
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 245 39
95 % 90 245 55
90 % 90 245 60
70 % 90 245 70
50 % 90 245 94
40 % 90 245 118
30 % 90 245 131
Entity #22 | Chains: V
5'-R(*UP*UP*UP*U)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: W
5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: a
5'-R(P*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #25 | Chains: b
5'-R(P*UP*UP*U)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 219 45
95 % 82 219 65
90 % 82 219 70
70 % 82 219 80
50 % 86 275 80
40 % 86 275 100
30 % 86 275 112
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 248 38
95 % 90 256 41
90 % 90 256 47
70 % 90 256 56
50 % 111 355 33
40 % 111 356 43
30 % 111 356 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 255 33
95 % 90 255 44
90 % 90 255 49
70 % 90 255 58
50 % 112 359 30
40 % 112 359 40
30 % 112 361 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 260 25
95 % 98 266 34
90 % 98 266 37
70 % 98 266 46
50 % 98 266 84
40 % 98 266 103
30 % 117 312 79
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 259 27
95 % 91 260 37
90 % 91 260 42
70 % 91 260 51
50 % 110 312 54
40 % 110 313 68
30 % 110 313 88
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 255 31
95 % 91 255 42
90 % 91 259 43
70 % 91 259 52
50 % 114 361 29
40 % 115 363 39
30 % 129 440 33
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 164 73
95 % 90 255 46
90 % 90 255 51
70 % 90 255 60
50 % 111 355 36
40 % 111 355 46
30 % 124 431 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.