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An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR7
Sequence Clusters for the Sequence Entities in PDB 4DR7
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 218 36
95% 68 219 51
90% 68 219 55
70% 68 219 67
50% 87 306 33
40% 87 306 43
30% 100 360 42
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 220 34
95% 68 220 47
90% 68 220 51
70% 68 220 62
50% 81 300 42
40% 96 361 30
30% 96 362 41
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 36 720
95% 68 227 38
90% 68 227 42
70% 81 311 23
50% 81 312 32
40% 81 312 42
30% 81 312 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 221 32
95% 68 221 45
90% 68 221 49
70% 68 221 60
50% 82 305 38
40% 82 305 50
30% 95 361 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 219 35
95% 68 219 52
90% 68 219 56
70% 68 220 65
50% 68 220 92
40% 68 220 113
30% 68 220 126
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 223 29
95% 72 228 26
90% 72 228 31
70% 72 228 43
50% 88 313 29
40% 88 314 40
30% 88 314 55
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 215 37
95% 68 220 49
90% 68 220 53
70% 68 220 64
50% 68 220 91
40% 68 221 112
30% 82 303 70
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 80 224
95% 68 214 56
90% 68 218 58
70% 68 218 69
50% 68 218 94
40% 68 218 116
30% 68 218 128
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 145 55
95% 65 194 64
90% 65 194 66
70% 65 194 79
50% 65 194 111
40% 65 194 130
30% 65 194 150
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 223 27
95% 69 223 41
90% 69 223 46
70% 69 223 57
50% 82 303 37
40% 82 303 48
30% 82 303 67
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 220 30
95% 68 221 42
90% 68 221 47
70% 68 221 58
50% 81 299 41
40% 81 300 51
30% 81 300 69
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 170 49
95% 68 219 50
90% 68 219 54
70% 68 219 66
50% 68 219 93
40% 68 219 114
30% 68 219 127
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 210 40
95% 68 210 59
90% 68 210 62
70% 68 210 73
50% 68 210 98
40% 68 210 120
30% 68 210 133
Entity #22: Chains: V - 5'-R(*UP*UP*UP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: a - 5'-R(P*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: b - 5'-R(P*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 193 45
95% 64 193 65
90% 64 193 67
70% 64 193 80
50% 67 236 78
40% 67 236 99
30% 67 236 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 213 38
95% 68 221 43
90% 68 221 48
70% 68 221 59
50% 81 300 39
40% 81 301 49
30% 81 301 68
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 220 33
95% 68 220 46
90% 68 220 50
70% 68 220 61
50% 82 304 36
40% 82 304 47
30% 82 306 65
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 225 24
95% 76 231 24
90% 76 231 29
70% 76 231 41
50% 76 231 83
40% 76 231 105
30% 88 270 79
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 224 26
95% 69 225 40
90% 69 225 44
70% 69 225 55
50% 81 268 51
40% 81 269 62
30% 81 269 81
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 220 31
95% 69 220 44
90% 69 224 45
70% 69 224 56
50% 84 306 34
40% 85 308 44
30% 99 365 40
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 130 75
95% 68 220 48
90% 68 220 52
70% 68 220 63
50% 81 300 43
40% 81 300 52
30% 94 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.