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An Information Portal to 110206 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR7
Sequence Clusters for the Sequence Entities in PDB 4DR7
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 218 36
95% 68 219 50
90% 68 219 54
70% 68 219 65
50% 87 306 31
40% 87 306 42
30% 100 359 42
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 220 34
95% 68 220 46
90% 68 220 50
70% 68 220 60
50% 81 300 42
40% 96 360 31
30% 96 361 41
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 36 712
95% 68 227 27
90% 68 227 32
70% 81 311 21
50% 81 312 30
40% 81 312 41
30% 81 312 56
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 221 32
95% 68 221 44
90% 68 221 48
70% 68 221 58
50% 82 305 38
40% 82 305 50
30% 95 360 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 219 35
95% 68 219 51
90% 68 219 55
70% 68 220 63
50% 68 220 92
40% 68 220 113
30% 68 220 126
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 223 28
95% 72 228 25
90% 72 228 29
70% 72 228 41
50% 88 313 28
40% 88 314 39
30% 88 314 55
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 215 37
95% 68 220 48
90% 68 220 52
70% 68 220 62
50% 68 220 91
40% 68 221 112
30% 82 303 69
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 80 223
95% 68 214 56
90% 68 218 57
70% 68 218 67
50% 68 218 94
40% 68 218 116
30% 68 218 128
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 145 55
95% 65 194 64
90% 65 194 66
70% 65 194 78
50% 65 194 111
40% 65 194 130
30% 65 194 149
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 223 27
95% 69 223 40
90% 69 223 45
70% 69 223 55
50% 82 303 36
40% 82 303 47
30% 82 303 66
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 220 30
95% 68 221 41
90% 68 221 46
70% 68 221 56
50% 81 299 41
40% 81 300 51
30% 81 300 68
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 170 49
95% 68 219 49
90% 68 219 53
70% 68 219 64
50% 68 219 93
40% 68 219 114
30% 68 219 127
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 210 39
95% 68 210 59
90% 68 210 62
70% 68 210 72
50% 68 210 98
40% 68 210 120
30% 68 210 133
Entity #22: Chains: V - 5'-R(*UP*UP*UP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: a - 5'-R(P*UP*GP*GP*AP*AP*AP*GP*(PSU))-3' rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: b - 5'-R(P*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 193 45
95% 64 193 65
90% 64 193 67
70% 64 193 79
50% 67 236 78
40% 67 236 99
30% 67 236 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 213 38
95% 68 221 42
90% 68 221 47
70% 68 221 57
50% 81 300 39
40% 81 301 49
30% 81 301 67
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 220 33
95% 68 220 45
90% 68 220 49
70% 68 220 59
50% 82 304 35
40% 82 304 46
30% 82 306 64
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 225 24
95% 76 231 23
90% 76 231 28
70% 76 231 39
50% 76 231 82
40% 76 231 104
30% 88 270 78
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 224 26
95% 69 225 38
90% 69 225 42
70% 69 225 52
50% 81 268 50
40% 81 269 60
30% 81 269 80
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 220 31
95% 69 220 43
90% 69 224 43
70% 69 224 53
50% 84 306 33
40% 85 308 43
30% 99 364 40
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 130 75
95% 68 220 47
90% 68 220 51
70% 68 220 61
50% 81 300 43
40% 81 300 52
30% 94 355 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.