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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR6
Sequence Clusters for the Sequence Entities in PDB 4DR6
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 265 27
95% 17 267 47
90% 17 267 49
70% 17 267 59
50% 23 382 34
40% 23 382 45
30% 23 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 268 25
95% 17 268 43
90% 17 268 45
70% 17 268 55
50% 17 376 41
40% 23 436 38
30% 23 436 51
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 29 1032
95% 17 275 35
90% 17 275 37
70% 17 388 24
50% 17 388 33
40% 17 388 44
30% 17 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 269 22
95% 17 269 41
90% 17 269 43
70% 17 269 53
50% 17 378 38
40% 17 378 51
30% 21 434 54
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 267 26
95% 17 267 48
90% 17 267 50
70% 17 267 60
50% 17 267 93
40% 17 267 119
30% 17 267 140
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 271 20
95% 17 276 32
90% 17 276 34
70% 17 276 47
50% 20 389 32
40% 20 389 43
30% 20 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 263 28
95% 17 268 45
90% 17 268 47
70% 17 268 57
50% 17 268 91
40% 17 268 117
30% 17 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 92 220
95% 17 262 49
90% 17 266 51
70% 17 266 61
50% 17 266 94
40% 17 266 120
30% 17 266 142
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 183 47
95% 17 232 61
90% 17 232 64
70% 17 232 78
50% 17 232 113
40% 17 232 138
30% 17 232 159
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 234 37
95% 18 234 59
90% 18 234 63
70% 18 234 77
50% 18 379 37
40% 18 379 49
30% 18 379 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 268 23
95% 17 269 38
90% 17 269 41
70% 17 269 51
50% 17 269 90
40% 17 376 53
30% 17 376 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 206 42
95% 17 267 46
90% 17 267 48
70% 17 267 58
50% 17 267 92
40% 17 267 118
30% 17 267 139
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 249 33
95% 17 249 52
90% 17 249 55
70% 17 249 66
50% 17 249 103
40% 17 249 130
30% 17 249 150
Entity #22: Chains: V - 5'-R(*UP*UP*UP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(P*UP*UP*GP*AP*GP*GP*(PSU)P*GP*G)-3' rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: a - 5'-R(P*CP*UP*UP*GP*AP*GP*GP*(PSU)P*GP*GP*U)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: b - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 230 38
95% 17 230 62
90% 17 230 65
70% 17 230 79
50% 17 293 73
40% 17 293 98
30% 17 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 261 29
95% 17 269 39
90% 17 269 42
70% 17 269 52
50% 17 376 39
40% 17 377 52
30% 17 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 268 24
95% 17 268 42
90% 17 268 44
70% 17 268 54
50% 17 380 36
40% 17 380 48
30% 17 382 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 273 18
95% 24 279 29
90% 24 279 30
70% 24 279 44
50% 24 279 82
40% 24 279 106
30% 26 326 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 272 19
95% 18 273 36
90% 18 273 38
70% 18 273 49
50% 19 321 56
40% 19 322 73
30% 19 322 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 268 21
95% 18 268 40
90% 18 272 39
70% 18 272 50
50% 19 382 35
40% 20 384 46
30% 25 441 47
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 155 76
95% 17 268 44
90% 17 268 46
70% 17 268 56
50% 17 376 40
40% 17 376 54
30% 21 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.