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An Information Portal to 109093 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR6
Sequence Clusters for the Sequence Entities in PDB 4DR6
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 204 25
95% 14 205 45
90% 14 205 47
70% 14 205 57
50% 21 290 35
40% 21 290 45
30% 23 342 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 206 23
95% 14 206 41
90% 14 206 43
70% 14 206 52
50% 15 284 41
40% 19 343 34
30% 19 344 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 33 848
95% 14 213 32
90% 14 213 35
70% 15 295 24
50% 15 296 34
40% 15 296 44
30% 15 296 67
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 207 20
95% 14 207 39
90% 14 207 41
70% 14 207 50
50% 15 289 39
40% 15 289 49
30% 17 343 48
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 205 24
95% 14 205 46
90% 14 205 48
70% 14 206 55
50% 14 206 85
40% 14 206 110
30% 14 206 129
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 209 18
95% 14 214 30
90% 14 214 33
70% 14 214 43
50% 18 297 33
40% 18 298 43
30% 18 298 65
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 201 29
95% 14 206 43
90% 14 206 45
70% 14 206 54
50% 14 206 84
40% 14 207 109
30% 15 287 74
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 80 223
95% 14 200 47
90% 14 204 49
70% 14 204 58
50% 14 204 87
40% 14 204 112
30% 14 204 131
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 131 56
95% 14 180 55
90% 14 180 57
70% 14 180 72
50% 14 180 119
40% 14 180 143
30% 14 180 159
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 209 17
95% 15 209 34
90% 15 209 38
70% 15 209 47
50% 16 287 38
40% 16 287 48
30% 16 287 71
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 206 21
95% 14 207 36
90% 14 207 39
70% 14 207 48
50% 15 283 43
40% 15 284 51
30% 15 284 73
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 156 52
95% 14 205 44
90% 14 205 46
70% 14 205 56
50% 14 205 86
40% 14 205 111
30% 14 205 130
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 196 32
95% 14 196 51
90% 14 196 53
70% 14 196 64
50% 14 196 97
40% 14 196 120
30% 14 196 143
Entity #22: Chains: V - 5'-R(*UP*UP*UP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(P*UP*UP*GP*AP*GP*GP*(PSU)P*GP*G)-3' rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: a - 5'-R(P*CP*UP*UP*GP*AP*GP*GP*(PSU)P*GP*GP*U)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: b - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 179 36
95% 14 179 56
90% 14 179 59
70% 14 179 73
50% 14 220 77
40% 14 220 101
30% 14 220 120
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 199 30
95% 14 207 37
90% 14 207 40
70% 14 207 49
50% 15 284 40
40% 15 285 50
30% 15 285 72
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 206 22
95% 14 206 40
90% 14 206 42
70% 14 206 51
50% 15 288 37
40% 15 288 47
30% 15 290 69
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 211 15
95% 21 217 28
90% 21 217 31
70% 21 217 41
50% 21 217 78
40% 21 217 102
30% 24 256 85
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 210 16
95% 15 211 33
90% 15 211 36
70% 15 211 45
50% 17 254 52
40% 17 255 67
30% 17 255 88
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 206 19
95% 15 206 38
90% 15 210 37
70% 15 210 46
50% 17 290 36
40% 18 292 46
30% 21 347 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 116 81
95% 14 206 42
90% 14 206 44
70% 14 206 53
50% 15 284 42
40% 15 284 52
30% 17 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.