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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR6
Sequence Clusters for the Sequence Entities in PDB 4DR6
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 217 36
95% 16 218 51
90% 16 218 55
70% 16 218 66
50% 24 306 31
40% 24 306 42
30% 26 368 40
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 219 34
95% 16 219 47
90% 16 219 51
70% 16 219 61
50% 18 300 42
40% 22 369 30
30% 22 370 38
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 36 727
95% 16 226 39
90% 16 226 43
70% 18 311 22
50% 18 312 30
40% 18 312 41
30% 18 312 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 220 32
95% 16 220 45
90% 16 220 49
70% 16 220 59
50% 18 305 39
40% 18 305 50
30% 20 369 44
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 218 35
95% 16 218 52
90% 16 218 56
70% 16 219 64
50% 16 219 92
40% 16 219 114
30% 16 219 128
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 222 29
95% 16 227 36
90% 16 227 40
70% 16 227 52
50% 21 313 29
40% 21 314 39
30% 21 314 54
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 214 37
95% 16 219 49
90% 16 219 53
70% 16 219 63
50% 16 219 91
40% 16 220 113
30% 18 303 70
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 80 226
95% 16 213 56
90% 16 217 58
70% 16 217 69
50% 16 217 94
40% 16 217 116
30% 16 217 130
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 145 55
95% 16 194 64
90% 16 194 67
70% 16 194 79
50% 16 194 113
40% 16 194 131
30% 16 194 150
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 222 28
95% 17 222 41
90% 17 222 46
70% 17 222 56
50% 19 303 38
40% 19 303 48
30% 19 303 67
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 219 30
95% 16 220 42
90% 16 220 47
70% 16 220 57
50% 18 299 41
40% 18 300 51
30% 18 300 69
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 169 49
95% 16 218 50
90% 16 218 54
70% 16 218 65
50% 16 218 93
40% 16 218 115
30% 16 218 129
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 209 40
95% 16 209 59
90% 16 209 62
70% 16 209 73
50% 16 209 100
40% 16 209 123
30% 16 209 135
Entity #22: Chains: V - 5'-R(*UP*UP*UP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(P*UP*UP*GP*AP*GP*GP*(PSU)P*GP*G)-3' rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: a - 5'-R(P*CP*UP*UP*GP*AP*GP*GP*(PSU)P*GP*GP*U)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: b - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 193 45
95% 16 193 65
90% 16 193 68
70% 16 193 80
50% 17 237 77
40% 17 237 102
30% 17 237 121
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 212 38
95% 16 220 43
90% 16 220 48
70% 16 220 58
50% 18 300 40
40% 18 301 49
30% 18 301 68
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 219 33
95% 16 219 46
90% 16 219 50
70% 16 219 60
50% 18 304 37
40% 18 304 47
30% 18 306 63
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 224 25
95% 23 230 24
90% 23 230 29
70% 23 230 41
50% 23 230 83
40% 23 230 108
30% 26 269 80
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 223 27
95% 17 224 40
90% 17 224 44
70% 17 224 54
50% 19 267 51
40% 19 268 64
30% 19 268 83
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 219 31
95% 17 219 44
90% 17 223 45
70% 17 223 55
50% 20 306 35
40% 21 308 43
30% 24 373 37
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 130 75
95% 16 219 48
90% 16 219 52
70% 16 219 62
50% 18 300 43
40% 18 300 52
30% 20 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.