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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR6
Sequence Clusters for the Sequence Entities in PDB 4DR6
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 197 29
95% 14 198 46
90% 14 198 48
70% 14 198 61
50% 21 283 35
40% 21 283 45
30% 23 334 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 199 26
95% 14 199 40
90% 14 199 42
70% 14 199 54
50% 15 277 41
40% 19 335 35
30% 19 336 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 29 1094
95% 14 206 32
90% 14 206 34
70% 15 288 24
50% 15 289 34
40% 15 289 44
30% 15 289 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 200 23
95% 14 200 38
90% 14 200 40
70% 14 200 51
50% 15 282 39
40% 15 282 50
30% 17 335 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 198 27
95% 14 198 47
90% 14 198 49
70% 14 199 57
50% 14 199 90
40% 14 199 113
30% 14 199 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 202 21
95% 14 207 31
90% 14 207 33
70% 14 207 43
50% 18 290 33
40% 18 291 43
30% 18 291 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 194 30
95% 14 199 42
90% 14 199 44
70% 14 199 56
50% 14 199 89
40% 14 200 112
30% 15 280 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 80 223
95% 14 193 50
90% 14 197 50
70% 14 197 62
50% 14 197 94
40% 14 197 117
30% 14 197 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 125 59
95% 14 174 72
90% 14 174 76
70% 14 174 90
50% 14 174 131
40% 14 174 149
30% 14 174 164
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 202 20
95% 15 202 34
90% 15 202 37
70% 15 202 47
50% 16 280 38
40% 16 280 49
30% 16 280 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 199 24
95% 14 200 35
90% 14 200 38
70% 14 200 48
50% 15 276 43
40% 15 277 52
30% 15 277 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 149 54
95% 14 198 45
90% 14 198 47
70% 14 198 60
50% 14 198 93
40% 14 198 115
30% 14 198 138
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 189 32
95% 14 189 52
90% 14 189 55
70% 14 189 68
50% 14 189 112
40% 14 189 135
30% 14 189 153
Entity #22: Chains: V - 5'-R(*UP*UP*UP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(P*UP*UP*GP*AP*GP*GP*(PSU)P*GP*G)-3' rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: a - 5'-R(P*CP*UP*UP*GP*AP*GP*GP*(PSU)P*GP*GP*U)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: b - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 173 48
95% 14 173 73
90% 14 173 77
70% 14 173 92
50% 14 214 78
40% 14 214 102
30% 14 214 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 192 31
95% 14 200 36
90% 14 200 39
70% 14 200 49
50% 15 277 40
40% 15 278 51
30% 15 278 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 199 25
95% 14 199 39
90% 14 199 41
70% 14 199 52
50% 15 281 37
40% 15 281 48
30% 15 283 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 204 18
95% 21 210 30
90% 21 210 32
70% 21 210 42
50% 21 210 83
40% 21 210 107
30% 24 249 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 203 19
95% 15 204 33
90% 15 204 35
70% 15 204 44
50% 17 247 56
40% 17 248 71
30% 17 248 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 199 22
95% 15 199 37
90% 15 203 36
70% 15 203 45
50% 17 283 36
40% 18 285 46
30% 21 339 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 109 86
95% 14 199 41
90% 14 199 43
70% 14 199 55
50% 15 277 42
40% 15 277 54
30% 17 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.