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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound
Sequence Clustering and Redundancy Reduction Results
4DR5
Sequence Clusters for the Sequence Entities in PDB 4DR5
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 189 28
95% 17 190 47
90% 17 190 50
70% 17 190 60
50% 24 271 34
40% 24 271 46
30% 24 276 66
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 191 26
95% 17 191 43
90% 17 191 45
70% 17 191 56
50% 18 265 41
40% 23 318 35
30% 23 318 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 29 1062
95% 17 198 34
90% 17 198 36
70% 18 277 24
50% 18 277 33
40% 18 277 45
30% 18 277 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 192 23
95% 17 192 40
90% 17 192 43
70% 17 192 54
50% 18 270 38
40% 18 270 51
30% 21 319 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 190 27
95% 17 190 48
90% 17 190 51
70% 17 190 61
50% 17 190 94
40% 17 190 119
30% 17 190 142
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 194 21
95% 18 199 33
90% 18 199 35
70% 18 199 47
50% 22 278 32
40% 22 278 43
30% 22 278 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 186 29
95% 17 191 45
90% 17 191 48
70% 17 191 58
50% 17 191 92
40% 17 191 117
30% 18 268 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 79 223
95% 17 185 49
90% 17 189 52
70% 17 189 62
50% 17 189 95
40% 17 189 120
30% 17 189 143
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 119 50
95% 16 168 61
90% 16 168 64
70% 16 168 80
50% 16 168 117
40% 16 168 140
30% 16 168 163
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 170 37
95% 17 170 59
90% 17 170 63
70% 17 170 78
50% 19 268 37
40% 19 268 50
30% 19 268 74
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 191 24
95% 17 192 37
90% 17 192 41
70% 17 192 52
50% 17 192 91
40% 18 265 54
30% 18 265 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 142 42
95% 17 190 46
90% 17 190 49
70% 17 190 59
50% 17 190 93
40% 17 190 118
30% 17 190 141
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 181 34
95% 17 181 53
90% 17 181 55
70% 17 181 69
50% 17 181 105
40% 17 181 132
30% 17 181 151
Entity #22: Chains: V - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 167 38
95% 16 167 63
90% 16 167 66
70% 16 167 82
50% 16 206 77
40% 16 206 101
30% 16 206 122
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 184 30
95% 17 192 38
90% 17 192 42
70% 17 192 53
50% 18 265 39
40% 18 266 52
30% 18 266 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 191 25
95% 17 191 42
90% 17 191 44
70% 17 191 55
50% 19 269 36
40% 19 269 49
30% 19 271 73
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 196 19
95% 24 202 30
90% 24 202 31
70% 24 202 45
50% 24 202 84
40% 24 202 108
30% 27 239 93
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 195 20
95% 18 196 36
90% 18 196 38
70% 18 196 49
50% 20 237 56
40% 20 238 74
30% 20 238 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 191 22
95% 18 191 39
90% 18 195 39
70% 18 195 50
50% 20 271 35
40% 21 273 47
30% 25 323 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 102 77
95% 17 191 44
90% 17 191 46
70% 17 191 57
50% 18 265 40
40% 18 265 55
30% 21 314 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.