Sequence Similarity Clusters for the Entities in PDB 4DR5

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 254 36
95 % 35 255 49
90 % 35 255 54
70 % 35 255 64
50 % 48 366 28
40 % 48 366 38
30 % 51 440 36
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 256 34
95 % 35 256 45
90 % 35 256 50
70 % 35 256 59
50 % 42 360 35
40 % 47 442 20
30 % 47 443 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 47 513
95 % 35 263 36
90 % 35 263 41
70 % 42 371 21
50 % 42 372 27
40 % 42 372 37
30 % 42 372 57
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 257 32
95 % 35 257 43
90 % 35 257 48
70 % 35 257 57
50 % 42 365 32
40 % 42 365 44
30 % 45 441 39
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 255 35
95 % 35 255 50
90 % 35 255 55
70 % 35 256 62
50 % 35 256 88
40 % 35 256 108
30 % 35 256 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 259 29
95 % 36 264 35
90 % 36 264 40
70 % 36 264 50
50 % 46 373 26
40 % 46 374 36
30 % 46 374 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 251 37
95 % 35 256 47
90 % 35 256 52
70 % 35 256 61
50 % 35 256 87
40 % 35 257 107
30 % 42 363 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 87 225
95 % 35 250 51
90 % 35 254 56
70 % 35 254 66
50 % 35 254 90
40 % 35 254 112
30 % 35 254 124
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 170 57
95 % 32 221 64
90 % 32 221 69
70 % 32 221 79
50 % 32 221 111
40 % 32 221 132
30 % 32 221 143
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 259 27
95 % 36 259 38
90 % 36 259 44
70 % 36 259 53
50 % 43 363 31
40 % 43 363 42
30 % 43 363 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 256 30
95 % 35 257 39
90 % 35 257 45
70 % 35 257 54
50 % 42 359 34
40 % 42 360 45
30 % 42 360 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 204 48
95 % 35 255 48
90 % 35 255 53
70 % 35 255 63
50 % 35 255 89
40 % 35 255 111
30 % 35 255 123
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 246 39
95 % 35 246 54
90 % 35 246 59
70 % 35 246 69
50 % 35 246 96
40 % 35 246 119
30 % 35 246 133
Entity #22 | Chains: V
5'-R(*UP*UP*U)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: W
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 220 45
95 % 32 220 65
90 % 32 220 70
70 % 32 220 80
50 % 33 280 77
40 % 33 280 99
30 % 33 280 112
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 249 38
95 % 35 257 40
90 % 35 257 46
70 % 35 257 55
50 % 42 360 33
40 % 42 361 43
30 % 42 361 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 256 33
95 % 35 256 44
90 % 35 256 49
70 % 35 256 58
50 % 43 364 30
40 % 43 364 41
30 % 43 366 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 261 25
95 % 42 267 34
90 % 42 267 37
70 % 42 267 46
50 % 42 267 84
40 % 42 267 103
30 % 50 313 82
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 260 26
95 % 36 261 37
90 % 36 261 42
70 % 36 261 51
50 % 43 313 56
40 % 43 314 74
30 % 43 314 95
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 256 31
95 % 36 256 42
90 % 36 260 43
70 % 36 260 52
50 % 44 366 29
40 % 45 368 39
30 % 49 447 31
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 165 73
95 % 35 256 46
90 % 35 256 51
70 % 35 256 60
50 % 42 360 36
40 % 42 360 46
30 % 45 437 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.