POP-OUT | CLOSE

An Information Portal to 109822 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
Sequence Clustering and Redundancy Reduction Results
4DR4
Sequence Clusters for the Sequence Entities in PDB 4DR4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 218 36
95% 103 219 50
90% 103 219 54
70% 103 219 65
50% 127 304 31
40% 127 304 42
30% 143 357 42
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 220 34
95% 103 220 46
90% 103 220 50
70% 103 220 60
50% 121 298 42
40% 139 358 31
30% 139 359 41
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 36 710
95% 103 227 27
90% 103 227 32
70% 121 309 22
50% 121 310 30
40% 121 310 41
30% 121 310 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 221 32
95% 103 221 44
90% 103 221 48
70% 103 221 58
50% 124 303 39
40% 124 303 50
30% 140 358 46
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 219 35
95% 103 219 51
90% 103 219 55
70% 103 220 63
50% 103 220 92
40% 103 220 113
30% 103 220 126
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 223 28
95% 107 228 25
90% 107 228 29
70% 107 228 41
50% 128 311 29
40% 128 312 39
30% 128 312 55
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 215 37
95% 103 220 48
90% 103 220 52
70% 103 220 62
50% 103 220 91
40% 103 221 112
30% 124 301 69
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 80 223
95% 102 214 56
90% 103 218 57
70% 103 218 67
50% 103 218 94
40% 103 218 116
30% 103 218 128
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 145 55
95% 97 194 64
90% 97 194 66
70% 97 194 78
50% 97 194 110
40% 97 194 129
30% 97 194 148
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 223 27
95% 104 223 40
90% 104 223 45
70% 104 223 55
50% 122 301 36
40% 122 301 47
30% 122 301 66
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 220 30
95% 103 221 41
90% 103 221 46
70% 103 221 56
50% 121 297 41
40% 121 298 51
30% 121 298 68
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 170 49
95% 103 219 49
90% 103 219 53
70% 103 219 64
50% 103 219 93
40% 103 219 114
30% 103 219 127
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 210 39
95% 103 210 59
90% 103 210 62
70% 103 210 72
50% 103 210 98
40% 103 210 120
30% 103 210 133
Entity #22: Chains: V - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 193 45
95% 96 193 65
90% 96 193 67
70% 96 193 79
50% 100 234 78
40% 100 234 99
30% 100 234 118
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 213 38
95% 103 221 42
90% 103 221 47
70% 103 221 57
50% 121 298 40
40% 121 299 49
30% 121 299 67
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 220 33
95% 103 220 45
90% 103 220 49
70% 103 220 59
50% 122 302 35
40% 122 302 46
30% 122 304 64
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 225 24
95% 111 231 23
90% 111 231 28
70% 111 231 39
50% 111 231 82
40% 111 231 104
30% 127 270 77
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 224 26
95% 104 225 38
90% 104 225 42
70% 104 225 52
50% 122 268 49
40% 122 269 60
30% 122 269 80
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 220 31
95% 103 220 43
90% 104 224 43
70% 104 224 53
50% 124 304 33
40% 125 306 44
30% 142 362 40
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 130 75
95% 103 220 47
90% 103 220 51
70% 103 220 61
50% 121 298 43
40% 121 298 52
30% 137 353 47
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.