POP-OUT | CLOSE

An Information Portal to 107049 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
Sequence Clustering and Redundancy Reduction Results
4DR4
Sequence Clusters for the Sequence Entities in PDB 4DR4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 194 28
95% 90 195 46
90% 90 195 48
70% 90 195 59
50% 113 276 35
40% 113 276 45
30% 129 327 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 196 26
95% 90 196 42
90% 90 196 44
70% 90 196 55
50% 107 270 42
40% 125 326 35
30% 125 326 47
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 29 1076
95% 90 203 31
90% 90 203 33
70% 107 282 24
50% 107 282 34
40% 107 282 44
30% 107 282 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 197 23
95% 90 197 38
90% 90 197 40
70% 90 197 52
50% 110 275 39
40% 110 275 52
30% 126 327 48
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 195 27
95% 90 195 47
90% 90 195 49
70% 90 195 60
50% 90 195 93
40% 90 195 116
30% 90 195 139
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 199 19
95% 94 204 30
90% 94 204 32
70% 94 204 44
50% 114 283 33
40% 114 283 43
30% 114 283 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 191 29
95% 90 196 44
90% 90 196 46
70% 90 196 57
50% 90 196 90
40% 90 196 114
30% 110 273 77
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 80 221
95% 89 190 49
90% 90 194 50
70% 90 194 61
50% 90 194 94
40% 90 194 117
30% 90 194 141
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 123 60
95% 84 172 70
90% 84 172 74
70% 84 172 88
50% 84 172 125
40% 84 172 146
30% 84 172 165
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 174 47
95% 84 174 69
90% 84 174 73
70% 84 174 87
50% 108 273 38
40% 108 273 50
30% 108 273 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 196 24
95% 90 197 35
90% 90 197 38
70% 90 197 50
50% 90 197 89
40% 107 270 54
30% 107 270 76
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 146 54
95% 90 195 45
90% 90 195 47
70% 90 195 58
50% 90 195 92
40% 90 195 115
30% 90 195 138
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 186 32
95% 90 186 51
90% 90 186 54
70% 90 186 66
50% 90 186 111
40% 90 186 134
30% 90 186 152
Entity #22: Chains: V - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 171 48
95% 83 171 73
90% 83 171 76
70% 83 171 90
50% 87 210 77
40% 87 210 101
30% 87 210 122
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 189 30
95% 90 197 36
90% 90 197 39
70% 90 197 51
50% 107 270 40
40% 107 271 53
30% 107 271 75
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 196 25
95% 90 196 40
90% 90 196 42
70% 90 196 54
50% 108 274 37
40% 108 274 49
30% 108 276 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 201 17
95% 98 207 29
90% 98 207 31
70% 98 207 42
50% 98 207 82
40% 98 207 108
30% 113 244 91
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 200 18
95% 91 201 33
90% 91 201 35
70% 91 201 46
50% 108 242 55
40% 108 243 71
30% 108 243 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 196 22
95% 90 196 37
90% 91 200 36
70% 91 200 47
50% 110 276 36
40% 111 278 46
30% 128 331 45
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 106 87
95% 90 196 43
90% 90 196 45
70% 90 196 56
50% 107 270 41
40% 107 270 55
30% 123 322 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.