Sequence Similarity Clusters for the Entities in PDB 4DR4

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 267 37
95 % 132 268 51
90 % 132 268 54
70 % 132 268 65
50 % 164 395 25
40 % 164 395 37
30 % 183 494 30
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 269 35
95 % 132 269 47
90 % 132 269 50
70 % 132 269 60
50 % 158 389 34
40 % 179 491 18
30 % 179 491 31
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 51 464
95 % 132 276 36
90 % 132 276 40
70 % 158 402 20
50 % 158 407 23
40 % 158 407 33
30 % 158 407 54
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 270 33
95 % 132 270 44
90 % 132 270 48
70 % 132 270 57
50 % 161 394 31
40 % 161 394 43
30 % 180 495 33
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 268 36
95 % 132 268 52
90 % 132 268 55
70 % 132 270 58
50 % 132 270 87
40 % 132 270 108
30 % 132 270 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 272 29
95 % 136 277 35
90 % 136 277 39
70 % 136 277 50
50 % 165 402 24
40 % 165 405 34
30 % 165 405 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 264 38
95 % 132 269 49
90 % 132 269 52
70 % 132 269 62
50 % 132 271 86
40 % 132 271 106
30 % 161 390 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 87 235
95 % 131 263 53
90 % 132 267 56
70 % 132 267 66
50 % 132 267 90
40 % 132 267 111
30 % 132 267 123
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 183 53
95 % 119 234 62
90 % 119 234 66
70 % 119 234 77
50 % 119 234 103
40 % 119 234 129
30 % 119 234 140
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 133 272 28
95 % 133 272 40
90 % 133 272 45
70 % 133 272 54
50 % 159 394 28
40 % 159 397 39
30 % 159 397 56
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 269 31
95 % 132 270 41
90 % 132 270 46
70 % 132 270 55
50 % 158 388 33
40 % 158 391 42
30 % 158 391 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 217 49
95 % 132 268 50
90 % 132 268 53
70 % 132 268 64
50 % 132 268 89
40 % 132 268 110
30 % 132 268 122
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 259 42
95 % 132 259 56
90 % 132 259 60
70 % 132 259 69
50 % 132 259 94
40 % 132 259 116
30 % 132 259 129
Entity #22 | Chains: V
5'-R(*UP*UP*U)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: W
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 233 45
95 % 118 233 63
90 % 118 233 67
70 % 118 233 78
50 % 123 302 80
40 % 123 302 97
30 % 123 302 113
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 262 39
95 % 132 270 42
90 % 132 270 47
70 % 132 270 56
50 % 158 390 30
40 % 158 393 40
30 % 158 393 59
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 269 34
95 % 132 269 46
90 % 132 269 49
70 % 132 269 59
50 % 159 394 29
40 % 159 394 41
30 % 159 396 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 274 26
95 % 140 280 33
90 % 140 280 38
70 % 140 280 49
50 % 140 280 84
40 % 140 280 103
30 % 163 334 88
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 133 273 27
95 % 133 274 38
90 % 133 274 42
70 % 133 274 52
50 % 158 336 65
40 % 158 339 76
30 % 158 339 91
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 269 32
95 % 132 269 43
90 % 133 273 43
70 % 133 273 53
50 % 161 395 26
40 % 162 399 35
30 % 183 504 28
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 178 65
95 % 132 269 48
90 % 132 269 51
70 % 132 269 61
50 % 158 389 35
40 % 158 389 45
30 % 177 492 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.