POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
Sequence Clustering and Redundancy Reduction Results
4DR4
Sequence Clusters for the Sequence Entities in PDB 4DR4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 204 25
95% 93 205 45
90% 93 205 47
70% 93 205 57
50% 117 290 35
40% 117 290 45
30% 133 342 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 206 23
95% 93 206 41
90% 93 206 43
70% 93 206 52
50% 111 284 41
40% 129 343 34
30% 129 344 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 33 847
95% 93 213 31
90% 93 213 34
70% 111 295 24
50% 111 296 34
40% 111 296 44
30% 111 296 67
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 207 20
95% 93 207 39
90% 93 207 41
70% 93 207 50
50% 114 289 39
40% 114 289 49
30% 130 343 48
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 205 24
95% 93 205 46
90% 93 205 48
70% 93 206 55
50% 93 206 85
40% 93 206 110
30% 93 206 129
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 209 18
95% 97 214 29
90% 97 214 32
70% 97 214 42
50% 118 297 33
40% 118 298 43
30% 118 298 65
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 201 29
95% 93 206 43
90% 93 206 45
70% 93 206 54
50% 93 206 84
40% 93 207 109
30% 114 287 74
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 80 223
95% 92 200 47
90% 93 204 49
70% 93 204 58
50% 93 204 87
40% 93 204 112
30% 93 204 131
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 131 56
95% 87 180 55
90% 87 180 57
70% 87 180 72
50% 87 180 119
40% 87 180 143
30% 87 180 159
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 209 17
95% 94 209 33
90% 94 209 37
70% 94 209 46
50% 112 287 38
40% 112 287 48
30% 112 287 71
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 206 21
95% 93 207 35
90% 93 207 38
70% 93 207 47
50% 111 283 43
40% 111 284 51
30% 111 284 73
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 156 52
95% 93 205 44
90% 93 205 46
70% 93 205 56
50% 93 205 86
40% 93 205 111
30% 93 205 130
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 196 32
95% 93 196 51
90% 93 196 53
70% 93 196 64
50% 93 196 97
40% 93 196 120
30% 93 196 143
Entity #22: Chains: V - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 179 36
95% 86 179 56
90% 86 179 59
70% 86 179 73
50% 90 220 77
40% 90 220 100
30% 90 220 120
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 199 30
95% 93 207 37
90% 93 207 40
70% 93 207 49
50% 111 284 40
40% 111 285 50
30% 111 285 72
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 206 22
95% 93 206 40
90% 93 206 42
70% 93 206 51
50% 112 288 37
40% 112 288 47
30% 112 290 69
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 211 15
95% 101 217 28
90% 101 217 31
70% 101 217 41
50% 101 217 78
40% 101 217 102
30% 117 256 85
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 210 16
95% 94 211 32
90% 94 211 35
70% 94 211 44
50% 112 254 51
40% 112 255 67
30% 112 255 88
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 206 19
95% 93 206 38
90% 94 210 36
70% 94 210 45
50% 114 290 36
40% 115 292 46
30% 132 347 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 116 81
95% 93 206 42
90% 93 206 44
70% 93 206 53
50% 111 284 42
40% 111 284 52
30% 127 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.