POP-OUT | CLOSE

An Information Portal to 108607 Biological Macromolecular Structures

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
Sequence Clustering and Redundancy Reduction Results
4DR4
Sequence Clusters for the Sequence Entities in PDB 4DR4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 197 29
95% 92 198 46
90% 92 198 48
70% 92 198 61
50% 116 283 35
40% 116 283 45
30% 132 334 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 199 26
95% 92 199 40
90% 92 199 42
70% 92 199 54
50% 110 277 41
40% 128 335 35
30% 128 336 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 29 1094
95% 92 206 32
90% 92 206 34
70% 110 288 24
50% 110 289 34
40% 110 289 44
30% 110 289 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 200 23
95% 92 200 38
90% 92 200 40
70% 92 200 51
50% 113 282 39
40% 113 282 50
30% 129 335 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 198 27
95% 92 198 47
90% 92 198 49
70% 92 199 57
50% 92 199 90
40% 92 199 113
30% 92 199 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 202 21
95% 96 207 31
90% 96 207 33
70% 96 207 43
50% 117 290 33
40% 117 291 43
30% 117 291 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 194 30
95% 92 199 42
90% 92 199 44
70% 92 199 56
50% 92 199 89
40% 92 200 112
30% 113 280 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 80 223
95% 91 193 50
90% 92 197 50
70% 92 197 62
50% 92 197 94
40% 92 197 117
30% 92 197 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 125 59
95% 86 174 72
90% 86 174 76
70% 86 174 90
50% 86 174 131
40% 86 174 149
30% 86 174 164
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 202 20
95% 93 202 34
90% 93 202 37
70% 93 202 47
50% 111 280 38
40% 111 280 49
30% 111 280 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 199 24
95% 92 200 35
90% 92 200 38
70% 92 200 48
50% 110 276 43
40% 110 277 52
30% 110 277 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 149 54
95% 92 198 45
90% 92 198 47
70% 92 198 60
50% 92 198 93
40% 92 198 115
30% 92 198 138
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 189 32
95% 92 189 52
90% 92 189 55
70% 92 189 68
50% 92 189 112
40% 92 189 135
30% 92 189 153
Entity #22: Chains: V - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 173 48
95% 85 173 73
90% 85 173 77
70% 85 173 92
50% 89 214 78
40% 89 214 102
30% 89 214 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 192 31
95% 92 200 36
90% 92 200 39
70% 92 200 49
50% 110 277 40
40% 110 278 51
30% 110 278 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 199 25
95% 92 199 39
90% 92 199 41
70% 92 199 52
50% 111 281 37
40% 111 281 48
30% 111 283 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 204 18
95% 100 210 30
90% 100 210 32
70% 100 210 42
50% 100 210 83
40% 100 210 107
30% 116 249 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 203 19
95% 93 204 33
90% 93 204 35
70% 93 204 44
50% 111 247 56
40% 111 248 71
30% 111 248 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 199 22
95% 92 199 37
90% 93 203 36
70% 93 203 45
50% 113 283 36
40% 114 285 46
30% 131 339 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 109 86
95% 92 199 41
90% 92 199 43
70% 92 199 55
50% 110 277 42
40% 110 277 54
30% 126 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.