Sequence Similarity Clusters for the Entities in PDB 4DR4

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 270 38
95 % 135 271 53
90 % 135 271 58
70 % 135 271 70
50 % 167 432 28
40 % 167 432 41
30 % 189 545 34
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 272 36
95 % 135 272 49
90 % 135 272 54
70 % 135 272 66
50 % 161 426 35
40 % 185 557 19
30 % 185 557 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 53 489
95 % 135 279 39
90 % 135 279 45
70 % 161 430 21
50 % 161 443 26
40 % 161 443 39
30 % 161 443 58
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 273 34
95 % 135 273 47
90 % 135 273 52
70 % 135 273 63
50 % 164 430 34
40 % 164 430 46
30 % 186 546 37
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 271 37
95 % 135 271 55
90 % 135 271 60
70 % 135 284 54
50 % 135 284 93
40 % 135 284 116
30 % 135 284 126
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 275 31
95 % 139 280 38
90 % 139 280 44
70 % 139 280 56
50 % 168 439 27
40 % 168 444 37
30 % 168 444 57
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 267 41
95 % 135 272 51
90 % 135 272 56
70 % 135 272 68
50 % 135 282 94
40 % 135 282 117
30 % 164 423 65
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 87 284
95 % 134 266 56
90 % 135 270 61
70 % 135 270 71
50 % 135 270 98
40 % 135 270 121
30 % 135 270 129
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 186 59
95 % 122 237 69
90 % 122 237 71
70 % 122 237 86
50 % 122 237 117
40 % 122 237 141
30 % 122 237 146
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 136 275 30
95 % 136 275 43
90 % 136 275 49
70 % 136 275 60
50 % 162 432 30
40 % 162 435 42
30 % 162 435 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 272 32
95 % 135 273 44
90 % 135 273 50
70 % 135 273 61
50 % 161 419 37
40 % 161 424 47
30 % 161 424 64
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 220 53
95 % 135 271 52
90 % 135 271 57
70 % 135 271 69
50 % 135 271 97
40 % 135 271 119
30 % 135 271 128
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 262 43
95 % 135 262 59
90 % 135 262 63
70 % 135 262 76
50 % 135 262 104
40 % 135 262 127
30 % 135 262 134
Entity #22 | Chains: V
5'-R(*UP*UP*U)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: W
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 236 49
95 % 121 236 70
90 % 121 236 72
70 % 121 236 87
50 % 126 310 86
40 % 126 310 106
30 % 126 310 120
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 265 42
95 % 135 273 45
90 % 135 273 51
70 % 135 273 62
50 % 161 427 32
40 % 161 432 43
30 % 161 432 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 272 35
95 % 135 272 48
90 % 135 272 53
70 % 135 272 64
50 % 162 427 33
40 % 162 427 45
30 % 162 429 63
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 277 28
95 % 143 283 37
90 % 143 283 42
70 % 143 283 52
50 % 143 283 92
40 % 143 283 115
30 % 166 366 95
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 136 276 29
95 % 136 277 40
90 % 136 277 46
70 % 136 277 57
50 % 161 367 67
40 % 161 372 85
30 % 161 372 97
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 272 33
95 % 135 272 46
90 % 136 276 47
70 % 136 276 58
50 % 164 432 29
40 % 165 438 40
30 % 189 562 32
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 112 181 71
95 % 135 272 50
90 % 135 272 55
70 % 135 272 67
50 % 161 421 36
40 % 161 421 48
30 % 183 546 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures