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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
Sequence Clustering and Redundancy Reduction Results
4DR4
Sequence Clusters for the Sequence Entities in PDB 4DR4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 252 29
95% 103 254 48
90% 103 254 51
70% 103 254 63
50% 145 369 34
40% 145 369 48
30% 145 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 255 27
95% 103 255 44
90% 103 255 47
70% 103 255 59
50% 139 363 42
40% 143 403 39
30% 143 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 29 959
95% 103 262 36
90% 103 262 38
70% 139 375 24
50% 139 375 33
40% 139 375 47
30% 139 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 256 24
95% 103 256 42
90% 103 256 45
70% 103 256 57
50% 139 365 39
40% 139 365 53
30% 141 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 254 28
95% 103 254 49
90% 103 254 52
70% 103 254 64
50% 103 254 99
40% 103 254 124
30% 103 254 144
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 258 21
95% 107 263 35
90% 107 263 37
70% 107 263 48
50% 146 376 32
40% 146 376 45
30% 146 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 250 31
95% 103 255 46
90% 103 255 49
70% 103 255 61
50% 103 255 97
40% 103 255 122
30% 139 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 92 219
95% 102 249 51
90% 103 253 53
70% 103 253 65
50% 103 253 100
40% 103 253 126
30% 103 253 146
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 172 49
95% 97 221 64
90% 97 221 68
70% 97 221 81
50% 97 221 116
40% 97 221 144
30% 97 221 166
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 223 38
95% 97 223 63
90% 97 223 67
70% 97 223 80
50% 140 366 38
40% 140 366 52
30% 140 366 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 255 25
95% 103 256 39
90% 103 256 43
70% 103 256 55
50% 103 256 96
40% 139 363 55
30% 139 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 193 43
95% 103 254 47
90% 103 254 50
70% 103 254 62
50% 103 254 98
40% 103 254 123
30% 103 254 143
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 238 34
95% 103 238 55
90% 103 238 59
70% 103 238 71
50% 103 238 110
40% 103 238 133
30% 103 238 153
Entity #22: Chains: V - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 219 39
95% 96 219 66
90% 96 219 70
70% 96 219 83
50% 110 282 81
40% 110 282 101
30% 110 282 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 248 32
95% 103 256 40
90% 103 256 44
70% 103 256 56
50% 139 363 40
40% 139 364 54
30% 139 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 255 26
95% 103 255 43
90% 103 255 46
70% 103 255 58
50% 140 367 37
40% 140 367 51
30% 140 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 260 18
95% 111 266 34
90% 111 266 36
70% 111 266 47
50% 111 266 88
40% 111 266 112
30% 135 313 95
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 259 20
95% 104 260 37
90% 104 260 39
70% 104 260 51
50% 127 308 57
40% 127 309 74
30% 127 309 97
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 255 23
95% 103 255 41
90% 104 259 40
70% 104 259 52
50% 142 369 36
40% 143 371 49
30% 146 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 142 82
95% 103 255 45
90% 103 255 48
70% 103 255 60
50% 139 363 41
40% 139 363 56
30% 141 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.