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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
Sequence Clustering and Redundancy Reduction Results
4DR4
Sequence Clusters for the Sequence Entities in PDB 4DR4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 265 27
95% 112 267 47
90% 112 267 49
70% 112 267 59
50% 154 382 34
40% 154 382 45
30% 154 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 268 25
95% 112 268 43
90% 112 268 45
70% 112 268 55
50% 148 376 41
40% 152 416 40
30% 152 416 52
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 29 966
95% 112 275 35
90% 112 275 37
70% 148 388 24
50% 148 388 33
40% 148 388 44
30% 148 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 269 22
95% 112 269 41
90% 112 269 43
70% 112 269 53
50% 148 378 38
40% 148 378 51
30% 150 414 55
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 267 26
95% 112 267 48
90% 112 267 50
70% 112 267 60
50% 112 267 93
40% 112 267 119
30% 112 267 140
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 271 20
95% 116 276 32
90% 116 276 34
70% 116 276 47
50% 155 389 32
40% 155 389 43
30% 155 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 263 28
95% 112 268 45
90% 112 268 47
70% 112 268 57
50% 112 268 91
40% 112 268 117
30% 148 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 92 220
95% 111 262 49
90% 112 266 51
70% 112 266 61
50% 112 266 94
40% 112 266 120
30% 112 266 142
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 183 47
95% 106 232 61
90% 106 232 64
70% 106 232 78
50% 106 232 113
40% 106 232 138
30% 106 232 158
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 234 37
95% 106 234 59
90% 106 234 63
70% 106 234 77
50% 149 379 37
40% 149 379 49
30% 149 379 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 268 23
95% 112 269 38
90% 112 269 41
70% 112 269 51
50% 112 269 90
40% 148 376 53
30% 148 376 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 206 42
95% 112 267 46
90% 112 267 48
70% 112 267 58
50% 112 267 92
40% 112 267 118
30% 112 267 139
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 249 33
95% 112 249 52
90% 112 249 55
70% 112 249 66
50% 112 249 103
40% 112 249 130
30% 112 249 150
Entity #22: Chains: V - 5'-R(*UP*UP*U)-3' rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 230 38
95% 105 230 62
90% 105 230 65
70% 105 230 79
50% 119 293 73
40% 119 293 97
30% 119 293 118
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 261 29
95% 112 269 39
90% 112 269 42
70% 112 269 52
50% 148 376 39
40% 148 377 52
30% 148 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 268 24
95% 112 268 42
90% 112 268 44
70% 112 268 54
50% 149 380 36
40% 149 380 48
30% 149 382 70
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 273 18
95% 120 279 29
90% 120 279 30
70% 120 279 44
50% 120 279 82
40% 120 279 106
30% 144 326 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 272 19
95% 113 273 36
90% 113 273 38
70% 113 273 49
50% 136 321 56
40% 136 322 73
30% 136 322 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 268 21
95% 112 268 40
90% 113 272 39
70% 113 272 50
50% 151 382 35
40% 152 384 46
30% 155 421 51
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 155 76
95% 112 268 44
90% 112 268 46
70% 112 268 56
50% 148 376 40
40% 148 376 54
30% 150 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.