Sequence Similarity Clusters for the Entities in PDB 4DR3

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 245 34
95 % 48 246 47
90 % 48 246 52
70 % 48 246 63
50 % 60 340 29
40 % 60 340 39
30 % 65 406 41
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 247 32
95 % 48 247 43
90 % 48 247 48
70 % 48 247 57
50 % 54 334 37
40 % 61 407 27
30 % 61 408 40
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 46 468
95 % 48 254 35
90 % 48 254 40
70 % 54 345 23
50 % 54 346 28
40 % 54 346 38
30 % 54 346 57
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 248 30
95 % 48 248 41
90 % 48 248 46
70 % 48 248 55
50 % 54 339 34
40 % 54 339 46
30 % 59 407 44
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 246 33
95 % 48 246 48
90 % 48 246 53
70 % 48 247 60
50 % 48 247 85
40 % 48 247 107
30 % 48 247 119
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 250 27
95 % 50 255 33
90 % 50 255 38
70 % 50 255 48
50 % 59 347 27
40 % 59 348 37
30 % 59 348 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 242 35
95 % 48 247 45
90 % 48 247 50
70 % 48 247 59
50 % 48 247 84
40 % 48 248 105
30 % 54 337 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 84 229
95 % 48 241 49
90 % 48 245 54
70 % 48 245 64
50 % 48 245 87
40 % 48 245 109
30 % 48 245 121
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 163 56
95 % 42 212 63
90 % 42 212 66
70 % 42 212 77
50 % 42 212 108
40 % 42 212 129
30 % 42 212 142
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 250 26
95 % 49 250 37
90 % 49 250 43
70 % 49 250 52
50 % 55 337 33
40 % 55 337 44
30 % 55 337 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 247 28
95 % 48 248 38
90 % 48 248 44
70 % 48 248 53
50 % 54 333 36
40 % 54 334 47
30 % 54 334 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 196 46
95 % 48 246 46
90 % 48 246 51
70 % 48 246 62
50 % 48 246 86
40 % 48 246 108
30 % 48 246 120
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 237 39
95 % 48 237 55
90 % 48 237 59
70 % 48 237 69
50 % 48 237 93
40 % 48 237 115
30 % 48 237 130
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 211 43
95 % 42 211 64
90 % 42 211 67
70 % 42 211 78
50 % 44 261 80
40 % 44 261 98
30 % 44 261 116
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 240 36
95 % 48 248 39
90 % 48 248 45
70 % 48 248 54
50 % 54 334 35
40 % 54 335 45
30 % 54 335 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 247 31
95 % 48 247 42
90 % 48 247 47
70 % 48 247 56
50 % 55 338 32
40 % 55 338 43
30 % 55 340 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 252 24
95 % 55 258 32
90 % 55 258 36
70 % 55 258 47
50 % 55 258 82
40 % 55 258 101
30 % 61 297 79
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 251 25
95 % 49 252 36
90 % 49 252 41
70 % 49 252 50
50 % 54 297 49
40 % 54 298 62
30 % 54 298 86
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 247 29
95 % 49 247 40
90 % 49 251 42
70 % 49 251 51
50 % 57 340 31
40 % 58 342 40
30 % 64 411 39
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 157 70
95 % 48 247 44
90 % 48 247 49
70 % 48 247 58
50 % 54 334 38
40 % 54 334 48
30 % 59 402 45

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.