Sequence Similarity Clusters for the Entities in PDB 4DR3

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 267 39
95 % 51 268 54
90 % 51 268 57
70 % 51 268 69
50 % 69 400 26
40 % 69 400 37
30 % 74 500 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 269 36
95 % 51 269 50
90 % 51 269 53
70 % 51 269 64
50 % 63 393 35
40 % 70 499 19
30 % 70 499 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 51 487
95 % 51 276 40
90 % 51 276 44
70 % 63 406 22
50 % 63 411 25
40 % 63 411 35
30 % 63 411 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 270 34
95 % 51 270 47
90 % 51 270 51
70 % 51 270 61
50 % 63 398 33
40 % 63 398 46
30 % 68 500 36
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 268 38
95 % 51 268 55
90 % 51 268 58
70 % 51 270 62
50 % 51 270 90
40 % 51 270 112
30 % 51 270 124
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 272 30
95 % 53 277 39
90 % 53 277 43
70 % 53 277 55
50 % 68 406 27
40 % 68 409 36
30 % 68 409 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 264 40
95 % 51 269 52
90 % 51 269 55
70 % 51 269 66
50 % 51 271 89
40 % 51 271 110
30 % 63 394 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 87 246
95 % 51 263 57
90 % 51 267 59
70 % 51 267 70
50 % 51 267 94
40 % 51 267 115
30 % 51 267 127
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 183 56
95 % 45 234 64
90 % 45 234 68
70 % 45 234 80
50 % 45 234 108
40 % 45 234 133
30 % 45 234 142
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 272 29
95 % 52 272 43
90 % 52 272 48
70 % 52 272 58
50 % 64 398 30
40 % 64 401 40
30 % 64 401 58
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 269 32
95 % 51 270 44
90 % 51 270 49
70 % 51 270 59
50 % 63 392 34
40 % 63 395 45
30 % 63 395 62
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 217 51
95 % 51 268 53
90 % 51 268 56
70 % 51 268 68
50 % 51 268 92
40 % 51 268 113
30 % 51 268 125
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 259 43
95 % 51 259 59
90 % 51 259 63
70 % 51 259 75
50 % 51 259 97
40 % 51 259 120
30 % 51 259 130
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 233 47
95 % 45 233 65
90 % 45 233 69
70 % 45 233 81
50 % 47 306 83
40 % 47 306 102
30 % 47 306 113
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 262 41
95 % 51 270 45
90 % 51 270 50
70 % 51 270 60
50 % 63 394 32
40 % 63 397 42
30 % 63 397 61
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 269 35
95 % 51 269 49
90 % 51 269 52
70 % 51 269 63
50 % 64 398 31
40 % 64 398 43
30 % 64 400 59
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 274 27
95 % 58 280 36
90 % 58 280 41
70 % 58 280 52
50 % 58 280 87
40 % 58 280 106
30 % 70 334 90
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 273 28
95 % 52 274 41
90 % 52 274 45
70 % 52 274 56
50 % 63 338 71
40 % 63 341 79
30 % 63 341 93
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 269 33
95 % 52 269 46
90 % 52 273 46
70 % 52 273 57
50 % 66 399 29
40 % 67 403 38
30 % 73 512 30
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 178 68
95 % 51 269 51
90 % 51 269 54
70 % 51 269 65
50 % 63 393 36
40 % 63 393 47
30 % 68 499 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.