Sequence Similarity Clusters for the Entities in PDB 4DR2

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 253 35
95 % 38 254 48
90 % 38 254 53
70 % 38 254 63
50 % 49 356 28
40 % 49 356 38
30 % 52 429 35
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 255 33
95 % 38 255 43
90 % 38 255 48
70 % 38 255 57
50 % 43 350 35
40 % 48 430 21
30 % 48 431 34
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 47 488
95 % 38 262 35
90 % 38 262 40
70 % 43 361 23
50 % 43 362 27
40 % 43 362 37
30 % 43 362 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 256 31
95 % 38 256 41
90 % 38 256 46
70 % 38 256 55
50 % 43 355 32
40 % 43 355 43
30 % 46 430 38
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 254 34
95 % 38 254 49
90 % 38 254 54
70 % 38 255 60
50 % 38 255 86
40 % 38 255 107
30 % 38 255 119
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 258 27
95 % 40 263 34
90 % 40 263 39
70 % 40 263 48
50 % 48 363 26
40 % 48 364 36
30 % 48 364 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 250 36
95 % 38 255 45
90 % 38 255 50
70 % 38 255 59
50 % 38 255 85
40 % 38 256 106
30 % 43 353 61
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 87 224
95 % 38 249 51
90 % 38 253 55
70 % 38 253 64
50 % 38 253 88
40 % 38 253 109
30 % 38 253 122
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 169 56
95 % 34 220 63
90 % 34 220 68
70 % 34 220 78
50 % 34 220 108
40 % 34 220 131
30 % 34 220 142
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 258 26
95 % 39 258 37
90 % 39 258 43
70 % 39 258 52
50 % 44 353 31
40 % 44 353 41
30 % 44 353 58
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 255 28
95 % 38 256 38
90 % 38 256 44
70 % 38 256 53
50 % 43 349 34
40 % 43 350 44
30 % 43 350 60
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 203 47
95 % 38 254 47
90 % 38 254 52
70 % 38 254 62
50 % 38 254 87
40 % 38 254 108
30 % 38 254 120
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 245 38
95 % 38 245 53
90 % 38 245 57
70 % 38 245 68
50 % 38 245 93
40 % 38 245 117
30 % 38 245 131
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 219 44
95 % 34 219 64
90 % 34 219 69
70 % 34 219 79
50 % 35 273 78
40 % 35 273 99
30 % 35 273 112
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 248 37
95 % 38 256 39
90 % 38 256 45
70 % 38 256 54
50 % 43 350 33
40 % 43 351 42
30 % 43 351 59
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 255 32
95 % 38 255 42
90 % 38 255 47
70 % 38 255 56
50 % 44 354 30
40 % 44 354 40
30 % 44 356 57
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 260 24
95 % 45 266 33
90 % 45 266 36
70 % 45 266 45
50 % 45 266 83
40 % 45 266 101
30 % 51 309 77
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 259 25
95 % 39 260 36
90 % 39 260 41
70 % 39 260 50
50 % 44 309 53
40 % 44 310 66
30 % 44 310 86
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 255 30
95 % 39 255 40
90 % 39 259 42
70 % 39 259 51
50 % 45 356 29
40 % 46 358 39
30 % 50 434 32
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 164 72
95 % 38 255 44
90 % 38 255 49
70 % 38 255 58
50 % 43 350 36
40 % 43 350 45
30 % 46 425 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.