Sequence Similarity Clusters for the Entities in PDB 4DR1

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 267 39
95 % 82 268 54
90 % 82 268 57
70 % 82 268 69
50 % 107 400 26
40 % 107 400 37
30 % 118 500 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 269 36
95 % 82 269 50
90 % 82 269 53
70 % 82 269 64
50 % 101 393 35
40 % 114 499 19
30 % 114 499 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 51 487
95 % 82 276 40
90 % 82 276 44
70 % 101 406 22
50 % 101 411 25
40 % 101 411 35
30 % 101 411 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 270 34
95 % 82 270 47
90 % 82 270 51
70 % 82 270 61
50 % 102 398 33
40 % 102 398 46
30 % 113 500 36
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 268 38
95 % 82 268 55
90 % 82 268 58
70 % 82 270 62
50 % 82 270 90
40 % 82 270 112
30 % 82 270 124
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 272 30
95 % 86 277 39
90 % 86 277 43
70 % 86 277 55
50 % 108 406 27
40 % 108 409 36
30 % 108 409 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 264 40
95 % 82 269 52
90 % 82 269 55
70 % 82 269 66
50 % 82 271 89
40 % 82 271 110
30 % 102 394 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 87 246
95 % 82 263 57
90 % 82 267 59
70 % 82 267 70
50 % 82 267 94
40 % 82 267 115
30 % 82 267 127
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 183 56
95 % 77 234 64
90 % 77 234 68
70 % 77 234 80
50 % 77 234 108
40 % 77 234 133
30 % 77 234 142
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 272 29
95 % 83 272 43
90 % 83 272 48
70 % 83 272 58
50 % 102 398 30
40 % 102 401 40
30 % 102 401 58
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 269 32
95 % 82 270 44
90 % 82 270 49
70 % 82 270 59
50 % 101 392 34
40 % 101 395 45
30 % 101 395 62
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 217 51
95 % 82 268 53
90 % 82 268 56
70 % 82 268 68
50 % 82 268 92
40 % 82 268 113
30 % 82 268 125
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 259 43
95 % 82 259 59
90 % 82 259 63
70 % 82 259 75
50 % 82 259 97
40 % 82 259 120
30 % 82 259 130
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 233 47
95 % 76 233 65
90 % 76 233 69
70 % 76 233 81
50 % 79 306 83
40 % 79 306 102
30 % 79 306 113
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 262 41
95 % 82 270 45
90 % 82 270 50
70 % 82 270 60
50 % 101 394 32
40 % 101 397 42
30 % 101 397 61
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 269 35
95 % 82 269 49
90 % 82 269 52
70 % 82 269 63
50 % 102 398 31
40 % 102 398 43
30 % 102 400 59
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 274 27
95 % 90 280 36
90 % 90 280 41
70 % 90 280 52
50 % 90 280 87
40 % 90 280 106
30 % 108 334 90
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 273 28
95 % 83 274 41
90 % 83 274 45
70 % 83 274 56
50 % 101 338 71
40 % 101 341 79
30 % 101 341 93
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 269 33
95 % 83 269 46
90 % 83 273 46
70 % 83 273 57
50 % 104 399 29
40 % 105 403 38
30 % 117 512 30
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 178 68
95 % 82 269 51
90 % 82 269 54
70 % 82 269 65
50 % 101 393 36
40 % 101 393 47
30 % 112 499 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.