POP-OUT | CLOSE

An Information Portal to 108607 Biological Macromolecular Structures

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)
Sequence Clustering and Redundancy Reduction Results
4DR1
Sequence Clusters for the Sequence Entities in PDB 4DR1
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 197 29
95% 51 198 46
90% 51 198 48
70% 51 198 61
50% 68 283 35
40% 68 283 45
30% 79 334 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 199 26
95% 51 199 40
90% 51 199 42
70% 51 199 54
50% 62 277 41
40% 75 335 35
30% 75 336 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 29 1094
95% 51 206 32
90% 51 206 34
70% 62 288 24
50% 62 289 34
40% 62 289 44
30% 62 289 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 200 23
95% 51 200 38
90% 51 200 40
70% 51 200 51
50% 63 282 39
40% 63 282 50
30% 74 335 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 198 27
95% 51 198 47
90% 51 198 49
70% 51 199 57
50% 51 199 90
40% 51 199 113
30% 51 199 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 202 21
95% 55 207 31
90% 55 207 33
70% 55 207 43
50% 69 290 33
40% 69 291 43
30% 69 291 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 194 30
95% 51 199 42
90% 51 199 44
70% 51 199 56
50% 51 199 89
40% 51 200 112
30% 63 280 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 80 223
95% 51 193 50
90% 51 197 50
70% 51 197 62
50% 51 197 94
40% 51 197 117
30% 51 197 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 125 59
95% 49 174 72
90% 49 174 76
70% 49 174 90
50% 49 174 131
40% 49 174 149
30% 49 174 164
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 202 20
95% 52 202 34
90% 52 202 37
70% 52 202 47
50% 63 280 38
40% 63 280 49
30% 63 280 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 199 24
95% 51 200 35
90% 51 200 38
70% 51 200 48
50% 62 276 43
40% 62 277 52
30% 62 277 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 149 54
95% 51 198 45
90% 51 198 47
70% 51 198 60
50% 51 198 93
40% 51 198 115
30% 51 198 138
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 189 32
95% 51 189 52
90% 51 189 55
70% 51 189 68
50% 51 189 112
40% 51 189 135
30% 51 189 153
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 173 48
95% 48 173 73
90% 48 173 77
70% 48 173 92
50% 50 214 78
40% 50 214 102
30% 50 214 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 192 31
95% 51 200 36
90% 51 200 39
70% 51 200 49
50% 62 277 40
40% 62 278 51
30% 62 278 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 199 25
95% 51 199 39
90% 51 199 41
70% 51 199 52
50% 63 281 37
40% 63 281 48
30% 63 283 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 204 18
95% 59 210 30
90% 59 210 32
70% 59 210 42
50% 59 210 83
40% 59 210 107
30% 70 249 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 203 19
95% 52 204 33
90% 52 204 35
70% 52 204 44
50% 63 247 56
40% 63 248 71
30% 63 248 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 199 22
95% 52 199 37
90% 52 203 36
70% 52 203 45
50% 65 283 36
40% 66 285 46
30% 78 339 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 109 86
95% 51 199 41
90% 51 199 43
70% 51 199 55
50% 62 277 42
40% 62 277 54
30% 73 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.