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An Information Portal to 107049 Biological Macromolecular Structures

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)
Sequence Clustering and Redundancy Reduction Results
4DR1
Sequence Clusters for the Sequence Entities in PDB 4DR1
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 194 28
95% 49 195 46
90% 49 195 48
70% 49 195 59
50% 65 276 35
40% 65 276 45
30% 76 327 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 196 26
95% 49 196 42
90% 49 196 44
70% 49 196 55
50% 59 270 42
40% 72 326 35
30% 72 326 47
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 29 1076
95% 49 203 31
90% 49 203 33
70% 59 282 24
50% 59 282 34
40% 59 282 44
30% 59 282 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 197 23
95% 49 197 38
90% 49 197 40
70% 49 197 52
50% 60 275 39
40% 60 275 52
30% 71 327 48
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 195 27
95% 49 195 47
90% 49 195 49
70% 49 195 60
50% 49 195 93
40% 49 195 116
30% 49 195 139
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 199 19
95% 53 204 30
90% 53 204 32
70% 53 204 44
50% 66 283 33
40% 66 283 43
30% 66 283 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 191 29
95% 49 196 44
90% 49 196 46
70% 49 196 57
50% 49 196 90
40% 49 196 114
30% 60 273 77
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 80 221
95% 49 190 49
90% 49 194 50
70% 49 194 61
50% 49 194 94
40% 49 194 117
30% 49 194 141
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 123 60
95% 47 172 70
90% 47 172 74
70% 47 172 88
50% 47 172 125
40% 47 172 146
30% 47 172 165
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 174 47
95% 47 174 69
90% 47 174 73
70% 47 174 87
50% 60 273 38
40% 60 273 50
30% 60 273 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 196 24
95% 49 197 35
90% 49 197 38
70% 49 197 50
50% 49 197 89
40% 59 270 54
30% 59 270 76
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 146 54
95% 49 195 45
90% 49 195 47
70% 49 195 58
50% 49 195 92
40% 49 195 115
30% 49 195 138
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 186 32
95% 49 186 51
90% 49 186 54
70% 49 186 66
50% 49 186 111
40% 49 186 134
30% 49 186 152
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 171 48
95% 46 171 73
90% 46 171 76
70% 46 171 90
50% 48 210 77
40% 48 210 101
30% 48 210 122
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 189 30
95% 49 197 36
90% 49 197 39
70% 49 197 51
50% 59 270 40
40% 59 271 53
30% 59 271 75
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 196 25
95% 49 196 40
90% 49 196 42
70% 49 196 54
50% 60 274 37
40% 60 274 49
30% 60 276 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 201 17
95% 57 207 29
90% 57 207 31
70% 57 207 42
50% 57 207 82
40% 57 207 108
30% 67 244 91
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 200 18
95% 50 201 33
90% 50 201 35
70% 50 201 46
50% 60 242 55
40% 60 243 71
30% 60 243 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 196 22
95% 50 196 37
90% 50 200 36
70% 50 200 47
50% 62 276 36
40% 63 278 46
30% 75 331 45
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 106 87
95% 49 196 43
90% 49 196 45
70% 49 196 56
50% 59 270 41
40% 59 270 55
30% 70 322 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.