Sequence Similarity Clusters for the Entities in PDB 4DR1

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 252 35
95 % 81 253 48
90 % 81 253 53
70 % 81 253 63
50 % 99 348 28
40 % 99 348 38
30 % 110 420 36
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 254 33
95 % 81 254 44
90 % 81 254 49
70 % 81 254 58
50 % 93 342 36
40 % 106 421 22
30 % 106 422 35
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 47 484
95 % 81 261 35
90 % 81 261 39
70 % 93 353 23
50 % 93 354 27
40 % 93 354 37
30 % 93 354 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 255 30
95 % 81 255 41
90 % 81 255 46
70 % 81 255 55
50 % 94 347 33
40 % 94 347 45
30 % 105 421 41
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 253 34
95 % 81 253 49
90 % 81 253 54
70 % 81 254 61
50 % 81 254 86
40 % 81 254 106
30 % 81 254 119
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 257 27
95 % 85 262 34
90 % 85 262 38
70 % 85 262 49
50 % 100 355 26
40 % 100 356 36
30 % 100 356 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 249 36
95 % 81 254 46
90 % 81 254 51
70 % 81 254 60
50 % 81 254 85
40 % 81 255 105
30 % 94 345 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 87 223
95 % 81 248 50
90 % 81 252 55
70 % 81 252 64
50 % 81 252 88
40 % 81 252 108
30 % 81 252 121
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 70 168 56
95 % 76 219 63
90 % 76 219 68
70 % 76 219 78
50 % 76 219 108
40 % 76 219 129
30 % 76 219 142
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 257 26
95 % 82 257 37
90 % 82 257 43
70 % 82 257 52
50 % 94 345 31
40 % 94 345 42
30 % 94 345 60
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 254 28
95 % 81 255 38
90 % 81 255 44
70 % 81 255 53
50 % 93 341 35
40 % 93 342 47
30 % 93 342 62
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 202 47
95 % 81 253 47
90 % 81 253 52
70 % 81 253 62
50 % 81 253 87
40 % 81 253 107
30 % 81 253 120
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 244 38
95 % 81 244 54
90 % 81 244 57
70 % 81 244 68
50 % 81 244 92
40 % 81 244 114
30 % 81 244 128
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 218 44
95 % 75 218 64
90 % 75 218 69
70 % 75 218 79
50 % 78 269 79
40 % 78 269 97
30 % 78 269 112
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 247 37
95 % 81 255 39
90 % 81 255 45
70 % 81 255 54
50 % 93 342 34
40 % 93 343 44
30 % 93 343 61
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 254 32
95 % 81 254 43
90 % 81 254 48
70 % 81 254 57
50 % 94 346 30
40 % 94 346 41
30 % 94 348 57
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 259 24
95 % 89 265 33
90 % 89 265 36
70 % 89 265 44
50 % 89 265 82
40 % 89 265 100
30 % 100 304 78
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 258 25
95 % 82 259 36
90 % 82 259 41
70 % 82 259 50
50 % 93 304 51
40 % 93 305 63
30 % 93 305 87
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 254 29
95 % 82 254 40
90 % 82 258 42
70 % 82 258 51
50 % 96 348 29
40 % 97 350 39
30 % 109 425 33
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 163 72
95 % 81 254 45
90 % 81 254 50
70 % 81 254 59
50 % 93 342 37
40 % 93 342 48
30 % 104 416 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.