Sequence Similarity Clusters for the Entities in PDB 4DQM

Entity #1 | Chains: A,C
Retinoic acid receptor alpha protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 8728
95 % 6 6 9032 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.4
PDBFlex
90 % 6 6 8946
70 % 22 22 2025
50 % 22 22 2032
40 % 22 22 2033
30 % 856 989 10
Entity #2 | Chains: B,D
Nuclear receptor coactivator 1 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.