Sequence Similarity Clusters for the Entities in PDB 4DPG

Entity #1 | Chains: A,B,C,D,E,F,G,H
Lysine--tRNA ligase protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4962
95 % 3 4 3886 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 4 3948
70 % 3 4 3868
50 % 9 16 1062
40 % 20 30 655
30 % 20 30 652
Entity #2 | Chains: I,J,K,L
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21434
95 % 1 1 19345 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 1 18803
70 % 2 3 8116
50 % 2 3 7451
40 % 2 3 6874
30 % 2 3 6012

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures