Sequence Similarity Clusters for the Entities in PDB 4DPG

Entity #1 | Chains: A,B,C,D,E,F,G,H
Lysine--tRNA ligase protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 3836
95 % 3 4 3421 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 4 3473
70 % 3 4 3436
50 % 6 10 1230
40 % 17 24 697
30 % 17 24 690
Entity #2 | Chains: I,J,K,L
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24658
95 % 1 1 21047 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 1 20457
70 % 2 3 7810
50 % 2 3 7196
40 % 2 3 6688
30 % 2 3 5963

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures