Sequence Similarity Clusters for the Entities in PDB 4DPG

Entity #1 | Chains: A,B,C,D,E,F,G,H
Lysine--tRNA ligase protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5114
95 % 3 4 3995 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 4 4050
70 % 3 4 3958
50 % 9 16 1081
40 % 20 30 671
30 % 20 30 671
Entity #2 | Chains: I,J,K,L
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21899
95 % 1 1 19781 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 1 19203
70 % 2 3 8329
50 % 2 3 7612
40 % 2 3 7008
30 % 2 3 6125

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures