Sequence Similarity Clusters for the Entities in PDB 4DPG

Entity #1 | Chains: A,B,C,D,E,F,G,H
Lysine--tRNA ligase protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4824
95 % 3 4 3767 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 4 3837
70 % 3 4 3764
50 % 8 12 1195
40 % 19 26 684
30 % 19 26 686
Entity #2 | Chains: I,J,K,L
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20920
95 % 1 1 18879 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 1 18366
70 % 2 3 7928
50 % 2 3 7280
40 % 2 3 6717
30 % 2 3 5880

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures