Sequence Similarity Clusters for the Entities in PDB 4DOP

Entity #1 | Chains: B,C
Cation efflux system protein CusB protein, length: 413 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 3905
95 % 5 8 4257 Flexibility: Medium
Max RMSD: 9.6, Avg RMSD: 5.1
PDBFlex
90 % 5 8 4301
70 % 5 8 4208
50 % 5 8 4069
40 % 5 8 3852
30 % 5 8 3521
Entity #2 | Chains: A
Cation efflux system protein CusA protein, length: 1054 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41205
95 % 7 11 6614
90 % 7 11 6696
70 % 7 11 6585
50 % 7 11 6143
40 % 7 11 5553
30 % 9 13 2793

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures