Sequence Similarity Clusters for the Entities in PDB 4DOP

Entity #1 | Chains: B,C
Cation efflux system protein CusB protein, length: 413 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 3193
95 % 5 8 3952 Flexibility: Medium
Max RMSD: 9.6, Avg RMSD: 5.1
PDBFlex
90 % 5 8 3991
70 % 5 8 3941
50 % 5 8 3825
40 % 5 8 3670
30 % 5 8 3427
Entity #2 | Chains: A
Cation efflux system protein CusA protein, length: 1054 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49792
95 % 7 11 6205
90 % 7 11 6195
70 % 7 11 6036
50 % 7 11 5646
40 % 7 11 5306
30 % 9 13 2741

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.