Sequence Similarity Clusters for the Entities in PDB 4DOP

Entity #1 | Chains: B,C
Cation efflux system protein CusB protein, length: 413 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 3282
95 % 5 8 4047 Flexibility: Medium
Max RMSD: 9.6, Avg RMSD: 5.1
PDBFlex
90 % 5 8 4085
70 % 5 8 4035
50 % 5 8 3902
40 % 5 8 3745
30 % 5 8 3495
Entity #2 | Chains: A
Cation efflux system protein CusA protein, length: 1054 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50797
95 % 7 11 6332
90 % 7 11 6324
70 % 7 11 6161
50 % 7 11 5762
40 % 7 11 5414
30 % 9 13 2800

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures