Sequence Similarity Clusters for the Entities in PDB 4DO5

Entity #1 | Chains: A,B
Alpha-N-acetylgalactosaminidase protein, length: 400 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 3927
95 % 2 7 4716 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 2 7 4739
70 % 2 9 3998
50 % 2 9 3876
40 % 2 26 1157
30 % 3 28 1100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures